View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_high_32 (Length: 280)
Name: NF20463_high_32
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 14442998 - 14443261
Alignment:
| Q |
1 |
aattgaaataattgaaagattaccgagtgataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagag |
100 |
Q |
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| T |
14442998 |
aattgaaataattgaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagag |
14443097 |
T |
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| Q |
101 |
cattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgtgacaacattcccaaccacattgtgaatcctcaaaatagcttccctcat |
200 |
Q |
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| T |
14443098 |
cattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaaccacattgtgaatcctcaaaatagcttccctcat |
14443197 |
T |
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| Q |
201 |
ttgtggcaacatataccaacataagttgttaccatcaccaaagtaactcataaattcttctcct |
264 |
Q |
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| T |
14443198 |
ttgtggcaacatataccaacataagttgttaccatcaccaaagtaactcataaattcttctcct |
14443261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 14433594 - 14433747
Alignment:
| Q |
14 |
gaaagattaccgagtgataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
113 |
Q |
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||||||| ||||||| |||||||| || || || |||||||||||| ||||||| | |||| ||||||| | || ||||| ||| | ||| ||||| |
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| T |
14433594 |
gaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttg |
14433693 |
T |
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| Q |
114 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattcccaac |
167 |
Q |
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| T |
14433694 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
14433747 |
T |
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