View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_high_33 (Length: 275)
Name: NF20463_high_33
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 474140 - 473922
Alignment:
| Q |
40 |
cgtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgac |
139 |
Q |
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| T |
474140 |
cgtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgac |
474041 |
T |
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| Q |
140 |
tcttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttc |
239 |
Q |
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| T |
474040 |
tcttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttc |
473941 |
T |
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| Q |
240 |
cgaaacacgttgctcaaag |
258 |
Q |
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| T |
473940 |
caaaacacgttgctcaaag |
473922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 466672 - 466498
Alignment:
| Q |
42 |
tacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgactc |
141 |
Q |
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||||| || |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | | || |
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| T |
466672 |
taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc |
466573 |
T |
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| Q |
142 |
ttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgt |
216 |
Q |
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| T |
466572 |
ttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgt |
466498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 479613 - 479414
Alignment:
| Q |
41 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
140 |
Q |
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|||||| || |||||||||| |||||||||| ||||||||||| |||| |||||| |||||||||| | || |||| ||||| ||||| | | |
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| T |
479613 |
gtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaatt |
479514 |
T |
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| Q |
141 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgctttcc |
240 |
Q |
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||| |||||| | || ||||||||||||||||| |||||| |||||| |||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
479513 |
cttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctttcc |
479414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 445863 - 445781
Alignment:
| Q |
51 |
aaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaag |
133 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||| || ||||||||||||||||| |
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| T |
445863 |
aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaag |
445781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 454956 - 454889
Alignment:
| Q |
42 |
tacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatac |
109 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||| |
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| T |
454956 |
tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaatac |
454889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 27493756 - 27493931
Alignment:
| Q |
41 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
140 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||||||||||| | | |
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| T |
27493756 |
gtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaatt |
27493855 |
T |
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| Q |
141 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgt |
216 |
Q |
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||| | |||||| ||| |||| |||||| ||||||||||||| ||||||||||||||| | || |||||||||| |
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| T |
27493856 |
cttgtaccaagagtcaagcctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
27493931 |
T |
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