View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_high_34 (Length: 272)
Name: NF20463_high_34
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_high_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 30025322 - 30025068
Alignment:
| Q |
18 |
caaatctggcccgggctacagccaactgcaggaaagcctatcatagcccaaggaggtttcaaccttccatccaacaatgcctacacaatccaacttccac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
30025322 |
caaatctggcccgggctacagccaactgcaggaaagcctatcatagcccaaggaggtttcaaccttccatctaacaatgcctacacactccaacttccac |
30025223 |
T |
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| Q |
118 |
cgctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30025222 |
cgctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatg |
30025123 |
T |
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| Q |
218 |
taacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaac |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30025122 |
taacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaac |
30025068 |
T |
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