View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20463_high_5 (Length: 641)

Name: NF20463_high_5
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20463_high_5
NF20463_high_5
[»] chr2 (17 HSPs)
chr2 (194-598)||(32156007-32156420)
chr2 (1-140)||(32156474-32156613)
chr2 (195-358)||(32147427-32147590)
chr2 (1-139)||(32157585-32157723)
chr2 (1-139)||(32212106-32212244)
chr2 (1-139)||(2821227-2821365)
chr2 (1-139)||(32110291-32110429)
chr2 (1-131)||(32182345-32182475)
chr2 (2-139)||(32174251-32174388)
chr2 (1-121)||(32152420-32152540)
chr2 (1-139)||(32207031-32207169)
chr2 (30-139)||(32147646-32147755)
chr2 (1-125)||(32118569-32118693)
chr2 (407-590)||(2821574-2821765)
chr2 (42-139)||(32153409-32153506)
chr2 (194-288)||(2821462-2821556)
chr2 (66-139)||(32534232-32534305)
[»] chr5 (1 HSPs)
chr5 (565-594)||(24502397-24502426)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 194 - 598
Target Start/End: Complemental strand, 32156420 - 32156007
Alignment:
Q  194 ctgaactagggagtgaaaatttataggccatgtttggatatgtactagaaacaataagttaagctatttagatactttatatccttttataggcatcttt 293  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32156420 ctgaactagggagtgaaaatatataggccatgtttggttatgtactagaaacaataagttaagctatttagatactctatatccttttataggcatcttt 32156321  T
Q  294 agacttaaaattatcttgagttgggtgtccactttcgtatcaaacatacaattgggatatttcaatttgcttgatgtttttcttgtaagaggaaagatat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  32156320 agacttaaaattatcttgagttgggtgtccactttcgtatcaaacttacaattgggatatttcaatttgcttgatgtttttcttgtaaaaggaaaaatat 32156221  T
Q  394 gcaatgtgcactatgtactatactttttgttgtgaaaaaatgttaaggtgggatagcacattagatgctctttggactatactttttgtgaaaaattatg 493  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32156220 gcagtgtgtactatgtactatactttttgttgtgaaaaaatgttaaggtgggatagcacattagatgctctttggactatactttttgtgaaaaattatg 32156121  T
Q  494 atttgtttgact---------ttgcaacaaatttccatggttctgttacaacccttgaaaaaagtgtcttcaagtcatgcttgctttcacaagaaatgta 584  Q
    ||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  32156120 atttgtttgacttaacctaccttgcaacaaatttccatggttctgttacaacccttgaaaaaagtgtctttaagtcattcttgctttcacaagaaatgta 32156021  T
Q  585 gtagagatatcggt 598  Q
     | || ||||||||    
T  32156020 ttcgacatatcggt 32156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 32156613 - 32156474
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32156613 attactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 32156514  T
Q  101 ctacagaatgcctacaagaccttatcaaatttctccaagt 140  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  32156513 ctacagaatgcctacaagaccttatcaaattcctccaagt 32156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 195 - 358
Target Start/End: Complemental strand, 32147590 - 32147427
Alignment:
Q  195 tgaactagggagtgaaaatttataggccatgtttggatatgtactagaaacaataagttaagctatttagatactttatatccttttataggcatcttta 294  Q
    ||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |    
T  32147590 tgaactaggtagagaaaatatataggccatgtttggttatgtactagaaacaataagttaagctctttagatactctatatccttttataggcatcttaa 32147491  T
Q  295 gacttaaaattatcttgagttgggtgtccactttcgtatcaaacatacaattgggatatttcaa 358  Q
    ||||||  |||||| |||||||||| || | ||||||||||||| |||||||||||||||||||    
T  32147490 gacttatgattatcgtgagttgggtctctattttcgtatcaaacttacaattgggatatttcaa 32147427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32157723 - 32157585
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||    
T  32157723 attactgaacatgaactctttgaaaagattgaagtgcttctaggagaagttcaagttactcctgctgaaattggagaagagctcacaaaggattgtgatg 32157624  T
Q  101 ctacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  32157623 ctacagaatgcctacaagaccttatcaaattcctccaag 32157585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 32212106 - 32212244
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||| ||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32212106 attactcaacatgaactctttgaaaagattgaactgcttctaggagaagttcaagttactcctgctgaaattgcagaagagctaacaaaggatgttgatg 32212205  T
Q  101 ctacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  32212206 ctacagaatgcctacaagaccttatcaaatccctccaag 32212244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 2821227 - 2821365
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||||    
T  2821227 attactcaacatgaactctttgaaaagattgaagttcttctaggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggattgtgatg 2821326  T
Q  101 ctacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  2821327 ctacaaaatgcctacaagaccttatcaaattcctccaag 2821365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32110429 - 32110291
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||    
T  32110429 attactgaacatgaactctttgaaaagattgaagttcttttaggagaagttcaagttactccagctgaaattgcagaagtgttaacaaaggatgttgatg 32110330  T
Q  101 ctacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  32110329 ctacagaatgcttacaagaccttatcaaattcctccaag 32110291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 32182475 - 32182345
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||  |||||    
T  32182475 attactgaacatgaactctttgaaaagattgaagtgcttctaggagaagttcaagttactccggctgaaattggagaagagctaacaaaggattgtgatg 32182376  T
Q  101 ctacagaatgcctacaagaccttatcaaatt 131  Q
    |||||||||||||||||||||||||||||||    
T  32182375 ctacagaatgcctacaagaccttatcaaatt 32182345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 32174388 - 32174251
Alignment:
Q  2 ttactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatgc 101  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||  ||||||    
T  32174388 ttactcaacatgaactctttgataagattgaagtgcttctaggagaagttcaagttactccagctgaaattgcagaagagctaaccaaggattgtgatgc 32174289  T
Q  102 tacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    |||||||||||||||||||||||| | ||| |||||||    
T  32174288 tacagaatgcctacaagaccttataatattcctccaag 32174251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 32152540 - 32152420
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||    
T  32152540 attactgaacatgaactctttgaaaagattgaagttcttttaggagaagttcaagttactcctgctgaaattgcagaagagctaacaaaggattgtgatg 32152441  T
Q  101 ctacagaatgcctacaagacc 121  Q
    |||||||||||||||||||||    
T  32152440 ctacagaatgcctacaagacc 32152420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 32207031 - 32207169
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||| ||||||||||||| ||  |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||   |||||    
T  32207031 attactcaacatgaactctttgaagagattgaagtgcttctaggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatg 32207130  T
Q  101 ctacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    | |||||||| ||| |||||||||||||||  |||||||    
T  32207131 caacagaatgtctagaagaccttatcaaatccctccaag 32207169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 32147755 - 32147646
Alignment:
Q  30 tgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatgctacagaatgcctacaagaccttatcaaa 129  Q
    |||||| ||| |||||||||||||||||||||| |||||||||||||||||| | |||||||||  ||||||||||||||||||||||||||||||||||    
T  32147755 tgaagtgcttttaggagaagttcaagttactccagctgaaattgcagaagagttaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaa 32147656  T
Q  130 tttctccaag 139  Q
    || |||||||    
T  32147655 ttcctccaag 32147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 32118693 - 32118569
Alignment:
Q  1 attactgaacatgaactcttcgataagattgaagtacttctaggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatg 100  Q
    |||||||||||||||||||| || |||||||||   ||||||||| |||||||||||||||| ||||||||||| |||||||| || ||||||  |||||    
T  32118693 attactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattgctgaagagctaacgaaggattgtgatg 32118594  T
Q  101 ctacagaatgcctacaagaccttat 125  Q
    |||||||||||||||||||||||||    
T  32118593 ctacagaatgcctacaagaccttat 32118569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 407 - 590
Target Start/End: Original strand, 2821574 - 2821765
Alignment:
Q  407 tgtactatactttttgttgtgaaaaaatgttaaggtgggatagcaca--ttagatgctctttggactatactttttgtgaaaaattatgatttgtttgac 504  Q
    ||||||| |||||||||||||||    ||||||||||||||| ||||  |||| |||||||||| ||| ||||||| |||||||||||||||||||||||    
T  2821574 tgtactacactttttgttgtgaa----tgttaaggtgggataacacacattagttgctctttggcctacactttttatgaaaaattatgatttgtttgac 2821669  T
Q  505 t---------ttgcaacaaatttccatggttctgttacaacccttgaaaaaagtgtc-ttcaagtcatgcttgctttcacaagaaatgtagtagag 590  Q
    |         |||||| ||||| ||||||||| |||||||||||||||||||||||| ||  ||||||||||| |||||||||||||| |||||||    
T  2821670 ttatcctaccttgcaaaaaattcccatggttcggttacaacccttgaaaaaagtgtcttttgagtcatgcttgttttcacaagaaatgcagtagag 2821765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 32153506 - 32153409
Alignment:
Q  42 aggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    |||| |||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||    
T  32153506 aggacaagttcaagttactccagctgaaattgtagaagagctaacaaaggaggttgatgctgcagaatgcctacaataccttatcaaattcctccaag 32153409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 2821462 - 2821556
Alignment:
Q  194 ctgaactagggagtgaaaatttataggccatgtttggatatgtactagaaacaataagttaagctatttagatactttatatccttttataggca 288  Q
    |||||||||| || |||||| |||||||||||||||| ||||||||||||| |||||| ||||||| ||||||| | ||||||||||||||||||    
T  2821462 ctgaactaggtagagaaaatatataggccatgtttggttatgtactagaaataataagctaagctaattagatattctatatccttttataggca 2821556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 32534305 - 32534232
Alignment:
Q  66 tgaaattgcagaagagcttacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatttctccaag 139  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  32534305 tgaaattgtagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctccaag 32534232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 594
Target Start/End: Original strand, 24502397 - 24502426
Alignment:
Q  565 ttgctttcacaagaaatgtagtagagatat 594  Q
    ||||||||||||||||||||||||||||||    
T  24502397 ttgctttcacaagaaatgtagtagagatat 24502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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