View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_high_9 (Length: 453)
Name: NF20463_high_9
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 4678114 - 4677724
Alignment:
| Q |
19 |
taatagtaaattcccatcatccatttatctagctaataaaatcgcaattgcattataatcaagataatcaagattttaaataaaggttagcaaccacaac |
118 |
Q |
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| T |
4678114 |
taatagtaaattcccatcatccatttatctagctaataaaatcgcaattgcattataatcaagat---------tttaaataaaggttagcaaccacaag |
4678024 |
T |
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| Q |
119 |
tctataatttattttcgttgttgtaatcacatcgcatctacgattgagattgcaacaattgtatttggtagtcattaatgacaatatcaagaatagctac |
218 |
Q |
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| T |
4678023 |
tctataatttattttcgttgttgtaatcacatcgcatctacgattgagattacaacaattgtatttgatagtcattaatgacaatatcaagaatagctac |
4677924 |
T |
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| Q |
219 |
acaacttcattagagtagcttttctttgtcaatagatgatttttaaaaatagaaataaaataattttcgttatgataaacaaaacaacnnnnnnnaaaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
4677923 |
acaacttcattagagtagcttttctttgtcaatagatgatttttaaaaatagaaataaaataattttcattatgataaacaaaacaactttttttaaaac |
4677824 |
T |
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| Q |
319 |
ctctaaatattcatctctaagttattttaaaaaacctctaaatattaatctc---taagttannnnnnnnnataatcggtaacaaataagccctaaatat |
415 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
4677823 |
ctctaaatattca----taagttatttt-aaaaacctctaaatattaatctctaataagtta-ttttttttataatcggtaacaaataagccctaaatat |
4677730 |
T |
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