View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20463_low_11 (Length: 412)

Name: NF20463_low_11
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20463_low_11
NF20463_low_11
[»] chr4 (3 HSPs)
chr4 (17-393)||(2886912-2887288)
chr4 (94-393)||(2897161-2897464)
chr4 (123-393)||(2877145-2877415)
[»] chr2 (4 HSPs)
chr2 (132-393)||(44223125-44223386)
chr2 (132-376)||(44233947-44234191)
chr2 (132-393)||(44210963-44211224)
chr2 (303-379)||(43457689-43457765)
[»] chr7 (11 HSPs)
chr7 (195-393)||(39589339-39589537)
chr7 (195-330)||(39338675-39338810)
chr7 (195-361)||(39353487-39353653)
chr7 (195-330)||(39366028-39366163)
chr7 (195-330)||(39538053-39538188)
chr7 (195-330)||(39547511-39547646)
chr7 (195-393)||(39564290-39564488)
chr7 (192-393)||(39575098-39575299)
chr7 (195-343)||(42133047-42133195)
chr7 (189-245)||(42171834-42171890)
chr7 (192-330)||(1084844-1084984)
[»] chr1 (2 HSPs)
chr1 (161-385)||(2160847-2161071)
chr1 (294-345)||(41687770-41687821)
[»] chr8 (1 HSPs)
chr8 (203-391)||(4501180-4501368)
[»] chr3 (1 HSPs)
chr3 (195-283)||(49773210-49773298)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 2887288 - 2886912
Alignment:
Q  17 caaccatttatcagatccaaaagtatgaaaaattagtatatgatccaaatgccaaatatctcaatcaatcaaatagtaaaaacagaaaaatcagtgtctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887288 caaccatttatcagatccaaaagtatgaaaaattagtatatgatccaaatgccaaatatctcaatcaatcaaatagtaaaaacagaaaaatcagtgtctt 2887189  T
Q  117 gagttttaaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887188 gagttttaaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggag 2887089  T
Q  217 aatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccacc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887088 aatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccacc 2886989  T
Q  317 agttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacac 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2886988 agttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacac 2886912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 94 - 393
Target Start/End: Original strand, 2897161 - 2897464
Alignment:
Q  94 aaaaacagaaaaatca----gtgtcttgagttttaaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagacca 189  Q
    ||||||||||||||||    |||||||||| |||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  2897161 aaaaacagaaaaatcacaaagtgtcttgagctttaaatactaacctttctggaattggaatcaacttctgctggtaaacgaagccaggccgagtagacca 2897260  T
Q  190 gtgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaat 289  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||    
T  2897261 ttgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaat 2897360  T
Q  290 ttttatgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgaga 389  Q
    ||||||| | || || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  2897361 ttttatggtgccatcgatataaccaccggtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgaga 2897460  T
Q  390 acac 393  Q
    ||||    
T  2897461 acac 2897464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 123 - 393
Target Start/End: Complemental strand, 2877415 - 2877145
Alignment:
Q  123 taaatacttacctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatgga 222  Q
    |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || |  |  ||||||||||||||||| ||||| || ||||    
T  2877415 taaatactaacctttctggtattggaatcaacttctgccggtaaacgaagccaagctgaatacagtaaggactcatagacagtaacttgaggggagtgga 2877316  T
Q  223 tatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagtttt 322  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  2877315 tatcattctgctcacaatagccagagattctagcaaatgtttcttgctttttagggtaaccagaaatttttatgctcccatcaatataaccactagtttt 2877216  T
Q  323 cctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacac 393  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || || ||||||||||    
T  2877215 cctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacac 2877145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 132 - 393
Target Start/End: Original strand, 44223125 - 44223386
Alignment:
Q  132 acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct 231  Q
    ||||||||||| || ||||||||  |||  |||||||||||||| ||||| || | ||  |||||||| || |||||||| || ||||||||||||||||    
T  44223125 acctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattct 44223224  T
Q  232 gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc 331  Q
    ||||||| || ||||| |||| |||||| |||||||| |||||||||||||||||||  || |||   || |||||||| ||||| ||||||||||||||    
T  44223225 gctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagc 44223324  T
Q  332 caaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacac 393  Q
    || ||||||||| | ||| ||||||||||||||||| || ||||| || || ||||||||||    
T  44223325 cagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacac 44223386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 132 - 376
Target Start/End: Original strand, 44233947 - 44234191
Alignment:
Q  132 acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct 231  Q
    ||||||||||| || ||||||||  |||  |||||||||||||| || ||||| | ||  |||||||| || ||||||||||| ||||||||||||||||    
T  44233947 acctttctggtgttggaatcaactcctgaaggtaaacgaagccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattct 44234046  T
Q  232 gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc 331  Q
    ||||||| ||||| ||||||| |||||| |||||||| |||||||| ||||||||||  || |||   || |||||||| ||||| ||||||||||||||    
T  44234047 gctcacagtaaccggagattctagcaaatgtttcttgctttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagc 44234146  T
Q  332 caaaacatccattaaagtagttttaccagctccactaactcccat 376  Q
    || ||||||||| | ||| ||||||||||||||||| || |||||    
T  44234147 cagaacatccatcagagttgttttaccagctccacttacacccat 44234191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 132 - 393
Target Start/End: Original strand, 44210963 - 44211224
Alignment:
Q  132 acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct 231  Q
    |||||||| ||||| ||||||||  | |  |||||||||||||| || ||||| |  || || ||||| || ||||||||||| ||||| ||||||||||    
T  44210963 acctttctagtattggaatcaactccagaaggtaaacgaagccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaatatcattct 44211062  T
Q  232 gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc 331  Q
    | ||||| || ||||| |||| |||||| |||||||| |||||||||||||||||||  || |||   || |||||||| ||||| ||||||||||||||    
T  44211063 gttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagc 44211162  T
Q  332 caaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacac 393  Q
    || ||||||||| | ||| ||||||||||||||||| || ||||| || || ||||||||||    
T  44211163 cagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacac 44211224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 43457689 - 43457765
Alignment:
Q  303 tcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaa 379  Q
    ||||| |||||||| || ||||| ||||| ||||||||||| ||||| || || |||||||||||||||||||||||    
T  43457689 tcaatgtaaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaa 43457765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 393
Target Start/End: Original strand, 39589339 - 39589537
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| ||||  ||||| |||||||| || ||||| || ||||||||| | |    
T  39589339 tcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttaggatatccagaaattgtga 39589438  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacac 393  Q
    || ||||  ||||||| ||||||||||| |||||||  |  |||||||  ||||||||||| ||||| ||  | || |||||||| |||||||||||||    
T  39589439 tggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgacgcccattaaagcagtgagaacac 39589537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 39338810 - 39338675
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    ||||||||||||||||||||||||||||||||| | |||||||| || ||||| ||||  ||||| |||||||| || || ||  | || |||||||| |    
T  39338810 tcatagacagtaacatgaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttga 39338711  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccag 330  Q
    || ||||  ||||||| ||||||||||| |||||||    
T  39338710 tgttcccaccaatatatccaccagtttttctaccag 39338675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 361
Target Start/End: Complemental strand, 39353653 - 39353487
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    |||||||||||||||| |||||||||||||||| | |||||||| || ||||| ||||  ||||| |||||||| ||||| || || || |||||| | |    
T  39353653 tcatagacagtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtga 39353554  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagc 361  Q
    || ||||  ||||||| ||||| ||||| |||||||  |  |||||||||| ||| ||||| |||||    
T  39353553 tgttcccaccaatatatccaccggtttttctaccagaaagcacatccattagagttgtttttccagc 39353487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 39366163 - 39366028
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    ||||||||||||||||||||||||||||||||| | ||||| || || ||||| ||||  ||||| |||||||| || || || || ||||| ||| | |    
T  39366163 tcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtga 39366064  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccag 330  Q
    || ||||  ||||||| ||||||||||| |||||||    
T  39366063 tgttcccaccaatatatccaccagtttttctaccag 39366028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 330
Target Start/End: Original strand, 39538053 - 39538188
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    |||||||||||||||| |||||||||||||||| | |||||||| || || || ||||  ||||| || ||||| || || || || ||||||||| | |    
T  39538053 tcatagacagtaacataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtga 39538152  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccag 330  Q
    || ||||  ||||||| ||||||||||| |||||||    
T  39538153 tgttcccaccaatatatccaccagtttttctaccag 39538188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 330
Target Start/End: Original strand, 39547511 - 39547646
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    ||||||||||||||||||||||||||||||||| | |||||||| || || || ||||  ||||| || ||||| || || || || ||||| ||| | |    
T  39547511 tcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtga 39547610  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccag 330  Q
    || ||||  ||||||| ||||||||||| |||||||    
T  39547611 tgttcccaccaatatatccaccagtttttctaccag 39547646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 393
Target Start/End: Original strand, 39564290 - 39564488
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| || ||||| ||||  ||||| |||||||| || || ||  | || |||||| | |    
T  39564290 tcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtga 39564389  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaacac 393  Q
    || ||||  ||||||| || || |||||||||||||  |  |||||||| | ||| ||||| ||||| ||  | || |||||||  |||||||||||||    
T  39564390 tgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacac 39564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 393
Target Start/End: Original strand, 39575098 - 39575299
Alignment:
Q  192 gactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattt 291  Q
    ||||||||||| |||| ||||||||| || |||||||| |||||||| || || || ||||  ||||| |||||||| ||||| || | ||| |||| |     
T  39575098 gactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttgctttttgggatgcccggaaactg 39575197  T
Q  292 ttatgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaac 391  Q
    | ||| ||||   |||||| || ||| ||||||||||||| |  |||||||| ||||| ||||| ||||| ||| | || ||||| |  |||||||||||    
T  39575198 tgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgacacccataagtgcagtgagaac 39575297  T
Q  392 ac 393  Q
    ||    
T  39575298 ac 39575299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 343
Target Start/End: Original strand, 42133047 - 42133195
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaattttta 294  Q
    ||||||||||| ||||  |||||||| |||||||| |||||||||||||||  || ||||||||| |||  ||| || || ||||| ||||| || || |    
T  42133047 tcatagacagttacatagggagaatgaatatcattttgctcacaataaccactgactcgagcaaatgttgtttggttctttgggtaaccagagatgttaa 42133146  T
Q  295 tgctcccgtcaatataaccaccagttttcctaccagccaaaacatccat 343  Q
    | || || |||||||| ||||| ||||| || || || || ||||||||    
T  42133147 tacttccttcaatatatccacctgtttttcttccggctaatacatccat 42133195  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 42171834 - 42171890
Alignment:
Q  189 agtgactcatagacagtaacatgaggagaatggatatcattctgctcacaataacca 245  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| || || ||||||    
T  42171834 agtgattcatagacagtaacatgaggagaatgaatatcattctgttcgcagtaacca 42171890  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 330
Target Start/End: Original strand, 1084844 - 1084984
Alignment:
Q  192 gactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttg-tttttta-gggtacccagaaat 289  Q
    ||||| |||||||||| ||||||||||||||||||  | |||||||| || ||||| ||||  | ||| |||||||| |||| || || || ||||||||    
T  1084844 gactcgtagacagtaaaatgaggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaat 1084943  T
Q  290 ttttatgctcccgtcaatataaccaccagttttcctaccag 330  Q
    | | ||| ||||  ||||||| ||| ||||||| |||||||    
T  1084944 tatgatgttcccaccaatatatccatcagtttttctaccag 1084984  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 385
Target Start/End: Original strand, 2160847 - 2161071
Alignment:
Q  161 tggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaac 260  Q
    ||||||||||||||| ||||| || | ||  || ||||| || ||||||| ||| ||||||||||||   ||||| ||||| || || || ||||||||     
T  2160847 tggtaaacgaagccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaat 2160946  T
Q  261 gtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccag 360  Q
    |||| ||| || || || || || || ||| | ||| | || |||||||| |||||||||||||| ||||| ||||||||||||| |||||| || || |    
T  2160947 gttttttgattctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccgg 2161046  T
Q  361 ctccactaactcccattaaggcagt 385  Q
    | ||||| || ||||| || |||||    
T  2161047 caccacttacacccatcaaagcagt 2161071  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 41687770 - 41687821
Alignment:
Q  294 atgctcccgtcaatataaccaccagttttcctaccagccaaaacatccatta 345  Q
    |||||||| |||||||||||||||||||| || ||||| | |||||||||||    
T  41687770 atgctcccttcaatataaccaccagtttttcttccagcaagaacatccatta 41687821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 391
Target Start/End: Complemental strand, 4501368 - 4501180
Alignment:
Q  203 agtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccg 302  Q
    |||||| ||||| ||||| |||||| | || |||||||||||||| | ||  ||||| |||||||| || |||||||| ||||| ||| | |     ||     
T  4501368 agtaacttgaggtgaatgaatatcagtttgttcacaataaccagaaactcttgcaaaggtttcttggttcttagggtatccagagattctaacatctcct 4501269  T
Q  303 tcaatataaccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggcagtgagaac 391  Q
    ||||| || |||||||| || || || || ||||||||||||||||| || || || || ||||||||||||||||  ||||| |||||    
T  4501268 tcaatgtagccaccagtctttcttcctgctaaaacatccattaaagttgtcttcccggcaccactaactcccattagtgcagtaagaac 4501180  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 49773298 - 49773210
Alignment:
Q  195 tcatagacagtaacatgaggagaatggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtaccc 283  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| || || || || |||| ||| |||||||| || |||||||||||    
T  49773298 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgtttcttgcttcttagggtaccc 49773210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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