View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_12 (Length: 411)
Name: NF20463_low_12
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 13910620 - 13910250
Alignment:
| Q |
18 |
atgatacagggaatagtgtgttggtgatggatcagattgaggtgtgcagtgaatgtcctacccttggaagatgaatggtttctcctcttttgtcaacggt |
117 |
Q |
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| T |
13910620 |
atgatacagggaatagtgtgttggtgatggatcagattgaggtgtgcagtgaatgtcctacccttggaagatgaatggtttctcctcttttgtcaatggt |
13910521 |
T |
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| Q |
118 |
ttgtgaattatttgcattgaagttctaggaagatggctactcctcttcc----ccaacatatcnnnnnnnntttgatttgtcttgattatgcaatccgaa |
213 |
Q |
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| T |
13910520 |
ttgtgaattatttgcattgtagttctaggaagatggctactcctcttccccggccaaaatatatcaaaacactcgatttgtcttgattatgcgatccgga |
13910421 |
T |
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| Q |
214 |
tgtgcaaaagaaaccctgatttacacgtctggattttgtaatccgtaaaaattgagtgttttgaaatatgttgaggttggagaagaaagtttcctcttgg |
313 |
Q |
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| T |
13910420 |
cgtgcaacagaaaccctgatttacacgtctggattttgtaatcggtaaaaattaagtgttttgaacga-gttgaggttggaggagaaagtttcctctagg |
13910322 |
T |
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| Q |
314 |
aaatagaatggtgggctttctctttgtaatataatatatgattatgttatttatctcctatgtattagtctc |
385 |
Q |
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| T |
13910321 |
gaatagaatggtgggctttctctttgtaatataatatatgattatgttatttatctctcatgtatcagtctc |
13910250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 14106446 - 14106331
Alignment:
| Q |
37 |
gttggtgatggatcagattgaggtgtgcagtgaatgtcctacccttggaagatgaatggtttctcctcttttgtcaacggtttgtgaattatttgcattg |
136 |
Q |
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| T |
14106446 |
gttggtgatcgataagcttaaggggtgcagtcaaagtcctattcttggaagatgaatggtttctcctcttttatgaatgttttgtgaattattttcattg |
14106347 |
T |
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| Q |
137 |
aagttctaggaagatg |
152 |
Q |
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| T |
14106346 |
taactctaggaagatg |
14106331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 14021418 - 14021312
Alignment:
| Q |
30 |
atagtgtgttggtgatggatcagattgaggtgtgcagtgaatgtcctacccttggaagatgaatggtttctcctcttttgtcaacggtttgtgaattatt |
129 |
Q |
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|||||| ||||||| || |||||||| ||||||||||| || | ||| |||||||||||||||||||||| | |||| | || ||||||||||||||| |
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| T |
14021418 |
atagtgcgttggtggtgaatcagattaaggtgtgcagtcaaagatttactcttggaagatgaatggtttctcttattttattaatggtttgtgaattatt |
14021319 |
T |
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| Q |
130 |
tgcattg |
136 |
Q |
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||||||| |
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| T |
14021318 |
tgcattg |
14021312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 14024038 - 14023962
Alignment:
| Q |
213 |
atgtgcaaaagaaaccctgatttacacgtctggattttgtaatccgtaaaaattgagtgttttgaaatatgttgagg |
289 |
Q |
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|||||||||||| |||||| |||||||||| ||||| |||||| | | |||||||||||||||| | ||||||||| |
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| T |
14024038 |
atgtgcaaaagacaccctgttttacacgtcgggattgtgtaattcagacaaattgagtgttttgagagatgttgagg |
14023962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 14109211 - 14109109
Alignment:
| Q |
30 |
atagtgtgttggtgatggatcagattgaggtgtgcagtgaatgtcctacccttggaagatgaatggtttctcctcttttgtcaacggtttgtgaattatt |
129 |
Q |
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|||||| ||| ||| || |||| ||| ||||||||||| || | ||||| || |||||||||||| ||||| |||||| | || | ||||||||||||| |
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| T |
14109211 |
atagtgcgttcgtggtgaatcaaattaaggtgtgcagtcaaagacctactctaggaagatgaatgctttcttttcttttatgaatgatttgtgaattatt |
14109112 |
T |
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| Q |
130 |
tgc |
132 |
Q |
| |
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||| |
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| T |
14109111 |
tgc |
14109109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 13863777 - 13863822
Alignment:
| Q |
91 |
aatggtttctcctcttttgtcaacggtttgtgaattatttgcattg |
136 |
Q |
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|||||||||||||||||| | || | |||||||||||||||||||| |
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| T |
13863777 |
aatggtttctcctcttttatgaatgttttgtgaattatttgcattg |
13863822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 13876271 - 13876324
Alignment:
| Q |
83 |
ggaagatgaatggtttctcctcttttgtcaacggtttgtgaattatttgcattg |
136 |
Q |
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| T |
13876271 |
ggaagatgaatggtttatcctcttttatgaatgttttgcgaattatttgcattg |
13876324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 13894344 - 13894445
Alignment:
| Q |
72 |
gtcctacccttggaagatgaatggtttctcctcttttgtcaacggtttgtgaattatttgcattgaagttctaggaagatggctactcctcttccccaac |
171 |
Q |
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||||||| || ||| |||||||| ||||||||||||| | || | ||| |||||||||||||||| | ||||| |||||| || ||| || || ||||| |
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| T |
13894344 |
gtcctactctaggaggatgaatgttttctcctcttttatgaatgttttatgaattatttgcattgtaactctagtaagatgacttctcatcgtctccaac |
13894443 |
T |
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| Q |
172 |
at |
173 |
Q |
| |
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|| |
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| T |
13894444 |
at |
13894445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 13894281 - 13894313
Alignment:
| Q |
33 |
gtgtgttggtgatggatcagattgaggtgtgca |
65 |
Q |
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| T |
13894281 |
gtgtgttggtgatggatcagattaaggtgtgca |
13894313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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