View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20463_low_13 (Length: 400)

Name: NF20463_low_13
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20463_low_13
NF20463_low_13
[»] chr5 (1 HSPs)
chr5 (84-382)||(4003179-4003470)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 84 - 382
Target Start/End: Complemental strand, 4003470 - 4003179
Alignment:
Q  84 aaaataatcaactaaatttaagatcaatctcatcatccacaaacaaaaactctaattaaaggcaaaacaaaactttgtatttactgacccaaaaatattt 183  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4003470 aaaataatcaacttattttaagatcaatctcatcatccacaaacaaaaactcttattaaaggcaaaacaaaactttgtatttactgacccaaaaatattt 4003371  T
Q  184 tacatcttagagattcaaactcaaaacttagaaaggaatacacttccaaatctcaagcttcaccacctagcctaggtcttaggttaacattattcatatg 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4003370 tacatcttagagattcaaactcaaaacttagaaaggaatacacttccaaatctcaagcttcaccacctagcctaggtcttaggttaacattattcatatg 4003271  T
Q  284 taaatatgggtgggggatcactctatagtctatacccattctcgatttatttcttttgggaccaaagcaaaaggcaaagggatgcagacaggcactaat 382  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4003270 taaatatgggtgggggatcactc-------tatacccattctcgatttatttcttttgggaccaaagaaaaaggcaaagggatgcagacaggcactaat 4003179  T

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