View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_14 (Length: 396)
Name: NF20463_low_14
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 222 - 372
Target Start/End: Complemental strand, 5472255 - 5472105
Alignment:
| Q |
222 |
gtcatacaatttgataagggtgtaacagtagcaatagtataaaagtggaaaaagaataatggtggtggttgtgaaatgatgaaaactaacactgaatagc |
321 |
Q |
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| T |
5472255 |
gtcatacaatttgataagggtgtaacagtagcaatagtataaaagtggaaaaagaataatggtggtggttgtgaaatgatgaaaactaacactgaatagc |
5472156 |
T |
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| Q |
322 |
ttgacgaaatgggggttgaggaatggtaaccaaacaacattcaatttacta |
372 |
Q |
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| T |
5472155 |
ttgacgaaatgggggttgaggaatggtaaccaaacaacattcaatttacta |
5472105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 5472453 - 5472279
Alignment:
| Q |
18 |
aagtacactccaagatctcaaaccaactactaggtcagcctcgaattggttaaaaaagacaacattatcaaataaaaagcannnnnnnn-cttacaatta |
116 |
Q |
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| T |
5472453 |
aagtacactccaagatctcaaaccaactaataggtcagccccaaattggttaaaaaagacaacattatcaaataaaaagcatttttttttcttacaatta |
5472354 |
T |
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| Q |
117 |
tatattctagtagtgcattattggttatgatattttgtctctcaaattaatgagatcacagtatagtactagcaa |
191 |
Q |
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| T |
5472353 |
tatattctagtagtgcattattggttatgatattttgtctctcaaattaatgagatcacagtatagtactagcaa |
5472279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13525619 - 13525569
Alignment:
| Q |
1 |
acatgagactttgagagaagtacactccaagatctcaaaccaactactagg |
51 |
Q |
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| T |
13525619 |
acatgagaccttgagagaagtacattctaaaatctcaaaccaactactagg |
13525569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13615154 - 13615104
Alignment:
| Q |
1 |
acatgagactttgagagaagtacactccaagatctcaaaccaactactagg |
51 |
Q |
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||||||||| |||||||||||||| || || |||||||||||||||||||| |
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| T |
13615154 |
acatgagaccttgagagaagtacattctaaaatctcaaaccaactactagg |
13615104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 22200699 - 22200739
Alignment:
| Q |
4 |
tgagactttgagagaagtacactccaagatctcaaaccaac |
44 |
Q |
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| T |
22200699 |
tgagactttgagagaagtaaactccaagatcccaaaccaac |
22200739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 11714965 - 11715005
Alignment:
| Q |
11 |
ttgagagaagtacactccaagatctcaaaccaactactagg |
51 |
Q |
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| T |
11714965 |
ttgagagaagcaaactccaagatctcaaaccaaccactagg |
11715005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 40591241 - 40591191
Alignment:
| Q |
4 |
tgagactttgagagaagtacactccaagatctcaaaccaactactaggtca |
54 |
Q |
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| T |
40591241 |
tgagactttgagaggagcacactccaagatctcaagccaactattaggtca |
40591191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 48991708 - 48991675
Alignment:
| Q |
1 |
acatgagactttgagagaagtacactccaagatc |
34 |
Q |
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| T |
48991708 |
acatgagactttgagagaagcacactccaagatc |
48991675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 1138635 - 1138587
Alignment:
| Q |
6 |
agactttgagagaagtacactccaagatctcaaaccaactactaggtca |
54 |
Q |
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|||| ||||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
1138635 |
agaccttgagaggagcacactccaagatctcaagccaaccactaggtca |
1138587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 6471726 - 6471690
Alignment:
| Q |
8 |
actttgagagaagtacactccaagatctcaaaccaac |
44 |
Q |
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||||||||||||| | ||||||||||||||||||||| |
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| T |
6471726 |
actttgagagaagcatactccaagatctcaaaccaac |
6471690 |
T |
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