View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_15 (Length: 384)
Name: NF20463_low_15
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 16556321 - 16555962
Alignment:
| Q |
8 |
tgagatgaagtgatttatgtttggataagtttacactaaaaaagatttaccaattgttaaaggatacaaatcatagaaaattattatccgaaattgtttt |
107 |
Q |
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| T |
16556321 |
tgagatgaagtgatttatgtttggataagtttacactaaaaaagatttaccaattgttaaaggatacaaatcatagaaaattattatccgaaattgtttt |
16556222 |
T |
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| Q |
108 |
tgctttgcggtggaagcttcaatttgtagctttgaatgaactcaagtatggacatagattcacgctgtagagattcgattttccgatttccaaacaacac |
207 |
Q |
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| T |
16556221 |
tgctttgcggtggaagcttcaatttgtagctttgaatgaactcaagtatggacatagattcacactgtagagattcgattttccgatttccaaacaacac |
16556122 |
T |
|
| Q |
208 |
aaaaattggttcaaatcacgtttgagtagtgactcgtgtttggctacataaaacacataaccaaacgagcagttagccggatctgaattcactgttgtag |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16556121 |
aaaaattggttcaaatcacgtttgagtagtgactcgtgtttggctacataaaacacataaccaaacgagcaattagccggatctgaattcactgttgtag |
16556022 |
T |
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| Q |
308 |
agtttgcatgtgattttacactgtaacatatctcgtctattgatttaagaactcaatttt |
367 |
Q |
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| T |
16556021 |
agtttgcacgtgattttacactgtaacatatctcgtctattgatttaagaactcaatttt |
16555962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 12246831 - 12246766
Alignment:
| Q |
76 |
aatcatagaaaattattatccgaaattgtttttgctttgcggtggaagcttcaatttgtagctttg |
141 |
Q |
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| T |
12246831 |
aatcacagaaagttaaaatcccaacttgattttgctttgccgtggaagcttcaatttgtagctttg |
12246766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 48408513 - 48408551
Alignment:
| Q |
105 |
ttttgctttgcggtggaagcttcaatttgtagctttgaa |
143 |
Q |
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| T |
48408513 |
ttttgctttgccgtgaaagcttcaatttgtagctttgaa |
48408551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 30841363 - 30841326
Alignment:
| Q |
105 |
ttttgctttgcggtggaagcttcaatttgtagctttga |
142 |
Q |
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| T |
30841363 |
ttttgctttgccgtgaaagcttcaatttgtagctttga |
30841326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 24899471 - 24899536
Alignment:
| Q |
76 |
aatcatagaaaattattatccgaaattgtttttgctttgcggtggaagcttcaatttgtagctttg |
141 |
Q |
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| T |
24899471 |
aatcacagaaagttaaaatcccaacttgattttgctttgtcgtggaagcttcaatttgtagctttg |
24899536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 47302368 - 47302405
Alignment:
| Q |
105 |
ttttgctttgcggtggaagcttcaatttgtagctttga |
142 |
Q |
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| T |
47302368 |
ttttgctttgctgtgaaagcttcaatttgtagctttga |
47302405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 38126159 - 38126196
Alignment:
| Q |
105 |
ttttgctttgcggtggaagcttcaatttgtagctttga |
142 |
Q |
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||||||||||| ||| |||||||||||||||||||||| |
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| T |
38126159 |
ttttgctttgccgtgaaagcttcaatttgtagctttga |
38126196 |
T |
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