View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_17 (Length: 371)
Name: NF20463_low_17
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 383950 - 384311
Alignment:
| Q |
1 |
caaacaaagccatgatttaatattgttcacacgcttggaagccgaccaatagaagtgcgtatataaaacaagaagcatgggcaactatctgctgcttgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
383950 |
caaacaaagccatgatttaatattgttcacacgcttggaagccaaccaatagaagtgcgtatataaaacaagaagcataggcaactatctgctgcttgaa |
384049 |
T |
|
| Q |
101 |
ggacatacattagccaaacaaagacatgaacaaactagaatacattaattaaacattataatggtccgcacactgaaagataacctatagaagtgcaact |
200 |
Q |
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| T |
384050 |
ggacatacattagccaaacaaagacatgatcaaactagaatacattaattaaacattataatggtccgcacactgaaagataacctatagaagtgcaact |
384149 |
T |
|
| Q |
201 |
aaaagcagaagcatagtgcataaattagaaaactagaaagcatggtaatctatattcgggttgaaggagttccttccttcttttgcagcattcttatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384150 |
aaaagcagaagcatagtgcataaattagaaaactagaaagcatgataatctatattcgggttgaaggagttccttccttcttttgcagcattcttatttt |
384249 |
T |
|
| Q |
301 |
ctaatcttacagcataattacggggaatgctaacgtcgaacaaggccactctaaagaataat |
362 |
Q |
| |
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| T |
384250 |
ctaatcttacagcataattacagggaatgctaacgtcgaacaaggccactctaaataataat |
384311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 383898 - 383964
Alignment:
| Q |
60 |
tatataaaacaagaagcatgggcaactatctgctgcttgaaggacatacattagccaaacaaagacatga |
129 |
Q |
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| T |
383898 |
tatataaaacaagaaatataggcaactatctgct---tgaagaacatatattagccaaacaaagccatga |
383964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 12541204 - 12541148
Alignment:
| Q |
188 |
tagaagtgcaactaaaagcagaagcatagtgcataaattagaaaactagaaagcatg |
244 |
Q |
| |
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|||||||| || ||||||||||||||| || | ||||||| |||||||||||||||| |
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|
| T |
12541204 |
tagaagtgaaagtaaaagcagaagcatggtccttaaattaaaaaactagaaagcatg |
12541148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 28239831 - 28239774
Alignment:
| Q |
187 |
atagaagtgcaactaaaagcagaagcatagtgcataaattagaaaactagaaagcatg |
244 |
Q |
| |
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| T |
28239831 |
atagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatg |
28239774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 47569791 - 47569735
Alignment:
| Q |
200 |
taaaagcagaagcatagtgcataaattagaaaactagaaagcatggtaatctatattc |
257 |
Q |
| |
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| T |
47569791 |
taaaagcaaaaacatagtccttaaattagaaaactagaaagcat-gtaatctacattc |
47569735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 12535019 - 12535075
Alignment:
| Q |
186 |
tatagaagtgcaactaaaagcagaagcatagtgcataaattagaaaactagaaagca |
242 |
Q |
| |
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||||||| ||| | ||||| |||||||||||| | | |||||||||||||||||||| |
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|
| T |
12535019 |
tatagaaatgcgagtaaaaacagaagcatagtcctttaattagaaaactagaaagca |
12535075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 28326936 - 28326888
Alignment:
| Q |
187 |
atagaagtgcaactaaaagcagaagcatagtgcataaattagaaaacta |
235 |
Q |
| |
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||||||||||||||||||||| ||||||||| | | |||||| |||||| |
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|
| T |
28326936 |
atagaagtgcaactaaaagcaaaagcatagtcctttaattagcaaacta |
28326888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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