View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20463_low_19 (Length: 362)

Name: NF20463_low_19
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20463_low_19
NF20463_low_19
[»] chr1 (7 HSPs)
chr1 (1-197)||(15590773-15590969)
chr1 (197-362)||(15591207-15591373)
chr1 (233-319)||(16008987-16009073)
chr1 (233-273)||(10129974-10130014)
chr1 (233-314)||(15998799-15998881)
chr1 (233-273)||(19490087-19490127)
chr1 (234-262)||(15603309-15603337)
[»] chr6 (22 HSPs)
chr6 (231-273)||(24730690-24730732)
chr6 (233-273)||(29882272-29882312)
chr6 (233-273)||(29909428-29909468)
chr6 (233-273)||(29929110-29929150)
chr6 (233-273)||(29946274-29946314)
chr6 (233-273)||(30053264-30053304)
chr6 (233-273)||(30154337-30154377)
chr6 (230-273)||(24890368-24890411)
chr6 (230-273)||(31000060-31000103)
chr6 (228-273)||(30149359-30149404)
chr6 (237-273)||(16702268-16702304)
chr6 (233-273)||(21160747-21160787)
chr6 (233-273)||(24739317-24739357)
chr6 (234-273)||(24897915-24897954)
chr6 (235-269)||(24263878-24263912)
chr6 (47-169)||(25521284-25521406)
chr6 (228-273)||(29950019-29950064)
chr6 (237-273)||(15715108-15715144)
chr6 (233-269)||(24272073-24272109)
chr6 (233-273)||(24942037-24942077)
chr6 (233-273)||(29876662-29876702)
chr6 (233-273)||(29953816-29953856)
[»] scaffold0237 (1 HSPs)
scaffold0237 (228-273)||(22175-22220)
[»] chr3 (4 HSPs)
chr3 (233-273)||(24226657-24226697)
chr3 (233-273)||(24219357-24219397)
chr3 (234-273)||(11991150-11991189)
chr3 (226-265)||(16350880-16350919)
[»] chr2 (2 HSPs)
chr2 (47-171)||(12250046-12250170)
chr2 (233-273)||(15062998-15063038)
[»] chr5 (3 HSPs)
chr5 (47-166)||(42125216-42125335)
chr5 (47-171)||(41712040-41712166)
chr5 (233-279)||(20888572-20888618)
[»] scaffold0014 (3 HSPs)
scaffold0014 (233-273)||(140135-140175)
scaffold0014 (226-265)||(137204-137243)
scaffold0014 (237-273)||(121593-121629)
[»] scaffold0051 (2 HSPs)
scaffold0051 (226-265)||(43415-43454)
scaffold0051 (233-265)||(48033-48065)
[»] scaffold0086 (1 HSPs)
scaffold0086 (228-273)||(31427-31472)
[»] scaffold0054 (1 HSPs)
scaffold0054 (228-269)||(53722-53763)
[»] scaffold0654 (1 HSPs)
scaffold0654 (237-273)||(1342-1378)
[»] scaffold0652 (1 HSPs)
scaffold0652 (237-273)||(1408-1444)
[»] scaffold0019 (1 HSPs)
scaffold0019 (233-265)||(126253-126285)
[»] chr8 (1 HSPs)
chr8 (237-273)||(13904719-13904755)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 15590773 - 15590969
Alignment:
Q  1 ttgttaccactcagatctaatgtgaaatgttgtccaaccattaaatcaaagaggaagattgattggagatcaaattgatgggttttggttttattgaaga 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15590773 ttgttaccactcaaatctaatgtgaaatgttgtccaaccattaaatcaaagaggaagattgattggagatcaaattgatgggttttggttttattgaaga 15590872  T
Q  101 cgtatttgtgtcatacaaaagtagctgctttaaatttgttgcattttgcacaagcctcttcaaggtggtttttctcattaaatgcaattctgtggga 197  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15590873 catatttgtgtcatacaaaagtagctgctttaaatttgttgcattttgcacaagcctcttcaaggtggtttttctcattaaatgcaattccgtggga 15590969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 197 - 362
Target Start/End: Original strand, 15591207 - 15591373
Alignment:
Q  197 atcaggtggtctaaagggagtaacgcttaataataccatgattaatggattatgtaagattaaaatggtggatgaagttatgaatttgaggaagaaatgt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15591207 atcaggtggtctaaagggagtaacgcttaataataccatgattaatggattatgtaagattaaaatagtggatgaagttatgaatttgaggaagaaatgt 15591306  T
Q  297 attccaaaaatatgattcctaatgccgagcaattcatcagagcg-ccagttgtatagaagagggcgt 362  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||||||||| ||||||||||||    
T  15591307 attccaaaaatatgattcctaatgtcgagaaattcatcagagagtccagttgtagagaagagggcgt 15591373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 16009073 - 16008987
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaagttatgaatttgaggaagaaatgtattccaaaaatatgattcctaat 319  Q
    ||||||||||||||||||||||||||| || || ||||||| | ||||| |     |||||||||||||||||||||||||||||||    
T  16009073 catgattaatggattatgtaagattaacattgtagatgaagctttgaatctctttgagaaatgtattccaaaaatatgattcctaat 16008987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 10129974 - 10130014
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  10129974 catgattaatggattttgtaagattaaaatggtggatgaag 10130014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 15998881 - 15998799
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaagttatgaat-ttgaggaagaaatgtattccaaaaatatgattc 314  Q
    ||||||||||| |||||||||||||||||| ||||||||| |  ||||| |    ||||||||||||||||||||| ||||||    
T  15998881 catgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaatttgattc 15998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 19490087 - 19490127
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  19490087 catgattaatggattatgtaagatgaaaatgttggatgaag 19490127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 15603309 - 15603337
Alignment:
Q  234 atgattaatggattatgtaagattaaaat 262  Q
    |||||||||||||||||||||||||||||    
T  15603309 atgattaatggattatgtaagattaaaat 15603337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 24730690 - 24730732
Alignment:
Q  231 accatgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24730690 accatgattaatggattatgtaagattaaaatggtggatgaag 24730732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 29882272 - 29882312
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29882272 catgattaatggattttgtaagattaaaatggtggatgaag 29882312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 29909428 - 29909468
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29909428 catgattaatggattttgtaagattaaaatggtggatgaag 29909468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 29929110 - 29929150
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29929110 catgattaatggattttgtaagattaaaatggtggatgaag 29929150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 29946274 - 29946314
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29946274 catgattaatggattttgtaagattaaaatggtggatgaag 29946314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 30053264 - 30053304
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  30053264 catgattaatggattatgtaagaataaaatggtggatgaag 30053304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 30154337 - 30154377
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  30154337 catgattaatggattatgtaaggttaaaatggtggatgaag 30154377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 24890411 - 24890368
Alignment:
Q  230 taccatgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  24890411 taccatggttaatggattttgtaagattaaaatggtggatgaag 24890368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 31000103 - 31000060
Alignment:
Q  230 taccatgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  31000103 taccatgattaatggattttgcaagattaaaatggtggatgaag 31000060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 30149359 - 30149404
Alignment:
Q  228 aataccatgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||    
T  30149359 aatatcatgattaacggattatgtaagaataaaatggtggatgaag 30149404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 16702304 - 16702268
Alignment:
Q  237 attaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16702304 attaatggattatgtaagattaaaatggttgatgaag 16702268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 21160787 - 21160747
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  21160787 catgattaatggactatgtaagaataaaatggtggatgaag 21160747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 24739357 - 24739317
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  24739357 catgattaatggactatgtaagactaaaatggtggatgaag 24739317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 24897915 - 24897954
Alignment:
Q  234 atgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  24897915 atgattaacggattatgtaagaataaaatggtggatgaag 24897954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 24263912 - 24263878
Alignment:
Q  235 tgattaatggattatgtaagattaaaatggtggat 269  Q
    ||||||||||||| |||||||||||||||||||||    
T  24263912 tgattaatggattttgtaagattaaaatggtggat 24263878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 25521406 - 25521284
Alignment:
Q  47 caaagaggaagattgattggagatcaaattgatgggttttggttttattgaagacgtatttgtgtcatacaaaagtagctgctttaaatttgttgcattt 146  Q
    ||||||||||||||| ||| | | ||||   ||||  |||||| |||| |||||| ||||||| | || |||||  | || || ||||||||||||||||    
T  25521406 caaagaggaagattggttgaaaagcaaagcaatggagtttggtcttatagaagacatatttgtataatccaaaaacaactcctgtaaatttgttgcattt 25521307  T
Q  147 tgcacaagcctcttcaaggtggt 169  Q
    |||| ||||||||| ||| ||||    
T  25521306 tgcaaaagcctctttaagatggt 25521284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 29950064 - 29950019
Alignment:
Q  228 aataccatgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  29950064 aatatcatgattaacggattatgtaagaataaaatggtgaatgaag 29950019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 15715144 - 15715108
Alignment:
Q  237 attaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||| |||||||||||||||||||| |||||||    
T  15715144 attaatggcttatgtaagattaaaatggttgatgaag 15715108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 24272109 - 24272073
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggat 269  Q
    |||||||||| |||| |||||||||||||||||||||    
T  24272109 catgattaatagattttgtaagattaaaatggtggat 24272073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 24942037 - 24942077
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||| | |||||||||||||| |||||||||||||||||    
T  24942037 catgataactggattatgtaagaataaaatggtggatgaag 24942077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 29876662 - 29876702
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  29876662 catgattaatggattttgtaaggttaaaatgatggatgaag 29876702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 29953856 - 29953816
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||| ||||||||||||| |||||||||| ||||||    
T  29953856 catgattaacggattatgtaagaataaaatggtgaatgaag 29953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 22175 - 22220
Alignment:
Q  228 aataccatgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  22175 aatatcatgattaatggattttgtaagattaaaatggtggatgaag 22220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 24226657 - 24226697
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  24226657 catgattaatggattatgtaagaataaaatggtggatgaag 24226697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 24219397 - 24219357
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  24219397 catgattagtggattttgtaagattaaaatggtggatgaag 24219357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 11991150 - 11991189
Alignment:
Q  234 atgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  11991150 atgattaatggattttgtaagattaaaatggttgatgaag 11991189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 16350880 - 16350919
Alignment:
Q  226 ataataccatgattaatggattatgtaagattaaaatggt 265  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  16350880 ataatatcatgattaatggattctgtaagattaaaatggt 16350919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 12250046 - 12250170
Alignment:
Q  47 caaagaggaagattgattggagatcaaattgatgggttttggttttattgaagacgtatttgtgtcatacaaaagtagctgctttaaatttgttgcattt 146  Q
    |||| ||||||||| |||| |||  ||||| ||||  ||| || ||||||||||| | ||||| | ||  |||| ||||| | | |||||||||||||||    
T  12250046 caaataggaagatttattgaagagaaaatttatggagtttagtcttattgaagacatgtttgtttgatttaaaaatagctccctcaaatttgttgcattt 12250145  T
Q  147 tgcacaagcctcttcaaggtggttt 171  Q
    ||||||| ||||||||| |||||||    
T  12250146 tgcacaaacctcttcaacgtggttt 12250170  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 15063038 - 15062998
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  15063038 catgattaatggattttgtaagattaaaatggtagatgaag 15062998  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 42125216 - 42125335
Alignment:
Q  47 caaagaggaagattgattggagatcaaattgatgggttttggttttattgaagacgtatttgtgtcatacaaaagtagctgctttaaatttgttgcattt 146  Q
    ||||||||||||||| ||| ||| ||||   ||||  |||||| ||||||||||| ||||||| | || |||||  |||| | | |||||||||||||||    
T  42125216 caaagaggaagattggttgaagagcaaagcaatggagtttggtcttattgaagacatatttgtattatccaaaaacagctccctcaaatttgttgcattt 42125315  T
Q  147 tgcacaagcctcttcaaggt 166  Q
    || ||||  |||||||||||    
T  42125316 tgaacaaatctcttcaaggt 42125335  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 41712166 - 41712040
Alignment:
Q  47 caaagaggaagattgattggagatcaaattgatgggttttggttttattgaagacgtatttgtgtcatacaaaagtag-ctgctttaa-atttgttgcat 144  Q
    ||||| |||||| |||||| ||| |||||  ||||  |||||||||||||||||| ||| |||||||| ||||| |||  ||||| || ||| ||||| |    
T  41712166 caaagtggaagaatgattgaagagcaaatccatggagtttggttttattgaagacatatctgtgtcatccaaaaatagtttgcttaaatattagttgcgt 41712067  T
Q  145 tttgcacaagcctcttcaaggtggttt 171  Q
    |||||| |||||| || ||||||||||    
T  41712066 tttgcataagcctatttaaggtggttt 41712040  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 20888572 - 20888618
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaagttatga 279  Q
    ||||||||| | ||||| ||||| |||||||||||||||||||||||    
T  20888572 catgattaacgtattatataagaataaaatggtggatgaagttatga 20888618  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 140135 - 140175
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  140135 catgattaatggattttgtaagattaaaatggttgatgaag 140175  T

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Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 137204 - 137243
Alignment:
Q  226 ataataccatgattaatggattatgtaagattaaaatggt 265  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  137204 ataatatcatgattaatggattctgtaagattaaaatggt 137243  T

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Target: scaffold0014; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 121629 - 121593
Alignment:
Q  237 attaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||| |||||||||||||||||||| |||||||    
T  121629 attaatggtttatgtaagattaaaatggttgatgaag 121593  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 43454 - 43415
Alignment:
Q  226 ataataccatgattaatggattatgtaagattaaaatggt 265  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  43454 ataatatcatgattaatggattttgtaagattaaaatggt 43415  T

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Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 48065 - 48033
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggt 265  Q
    ||||||||||||||| |||||||||||||||||    
T  48065 catgattaatggattctgtaagattaaaatggt 48033  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 31472 - 31427
Alignment:
Q  228 aataccatgattaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||| ||| |||||||||||||||||||||||||| || |||||||    
T  31472 aatatcattattaatggattatgtaagattaaaattgttgatgaag 31427  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 53763 - 53722
Alignment:
Q  228 aataccatgattaatggattatgtaagattaaaatggtggat 269  Q
    |||| ||||||||||||||| ||||||||||||| |||||||    
T  53763 aatatcatgattaatggattttgtaagattaaaaaggtggat 53722  T

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Target: scaffold0654 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 1378 - 1342
Alignment:
Q  237 attaatggattatgtaagattaaaatggtggatgaag 273  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  1378 attaatggattctgtaagattaaaatggtcgatgaag 1342  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 1444 - 1408
Alignment:
Q  237 attaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||| |||||||||||||||||||| |||||||    
T  1444 attaatggtttatgtaagattaaaatggttgatgaag 1408  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 126285 - 126253
Alignment:
Q  233 catgattaatggattatgtaagattaaaatggt 265  Q
    |||||||||||||||||||||| ||||||||||    
T  126285 catgattaatggattatgtaaggttaaaatggt 126253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 13904755 - 13904719
Alignment:
Q  237 attaatggattatgtaagattaaaatggtggatgaag 273  Q
    |||||||| |||||||||||||||||||| |||||||    
T  13904755 attaatggcttatgtaagattaaaatggttgatgaag 13904719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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