View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_2 (Length: 868)
Name: NF20463_low_2
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 17 - 855
Target Start/End: Original strand, 43436495 - 43437332
Alignment:
| Q |
17 |
tatacaccagacacgtattttggaatagaaaaaacatcagattgnnnnnnnnnnnntataagtcacgatgaagtttaaaaggtcttacctcagtgcaagt |
116 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43436495 |
tatacaccagacacgtattttggaata-aaaaaacatcagattgaaaaataaaaaatataagtcacg-tgaagtttaaaaggtcttacctcagtgcaagt |
43436592 |
T |
|
| Q |
117 |
ctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataactgatatcaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436593 |
ctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataactgatatcaacc |
43436692 |
T |
|
| Q |
217 |
ataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaaaggataaccagtcgcataacaatgacaaagcgatatggatttat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436693 |
ataatggatatgcactgcgcactggattggttattcgataatgcaagaaaaagcaaaggataaccagtcgcataacaatgacaaagcgatatggatttat |
43436792 |
T |
|
| Q |
317 |
cttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatcattcctacataaacaaagaaagctgatataagcatttt-tcggaaaaat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
43436793 |
cttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatcattcctatataaacaaagaaagctgatataagcattttttcggaaaaat |
43436892 |
T |
|
| Q |
416 |
ttgtctcttagcataagtcctacttcaaattactagatacacttgttatttttcagatatacccctacttaatactaataacttgggagacaagaagtca |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43436893 |
ttgtctcttagcataagtcctacttcaaattactagatacacttgttatttttcagatatacccctacttaatattaataacttgggagacaagaagtca |
43436992 |
T |
|
| Q |
516 |
tagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctatttttcttaatatgcgtga |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43436993 |
tagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctatttttcttaatatgcgtga |
43437092 |
T |
|
| Q |
616 |
aaattgcaaaaggggcttataataaatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaactggtacatcagatctggaatcaacatctc |
715 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43437093 |
aaatcgcaaaaggggcttataataaatgagagaggtaataaaggaaatactaacaacaacgaatcatcaacaggtacatcagatctggaatcaacatctc |
43437192 |
T |
|
| Q |
716 |
catcgcctctttcagaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttctttccacgctatatt |
815 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437193 |
catcgcctctttcagaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttctttccacgctatatt |
43437292 |
T |
|
| Q |
816 |
tcccagtcctgcatccgcaaccctggtatttgctgcagaa |
855 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43437293 |
tcccagtcctgcatccgcaaccctggtatttgctgcagaa |
43437332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 83 - 393
Target Start/End: Original strand, 13826556 - 13826865
Alignment:
| Q |
83 |
gatgaagtttaaaaggtcttacctcagtgcaagtctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatg |
182 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13826556 |
gatgatgtttaaaaggctgtacctcagtgcaagtctgtcgagatatgtttcgcggttgacaggaagccacttagggaattgatccaatatccaggatatg |
13826655 |
T |
|
| Q |
183 |
gcaaagcaaatctcgcacataactgatatcaaccataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaaaggataacca |
282 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||||| ||||||| |||| || ||||| |||| |||||||||| |||||||| ||||| |
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|
| T |
13826656 |
gcaaaccaaatctcgcatataactgataccaaccataatgcatatgcattgcggaccggatttgttaatcgataatgcaagaaaatgcaaaggacaacca |
13826755 |
T |
|
| Q |
283 |
gtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatcattcctacataaaca |
382 |
Q |
| |
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|||||| ||||||||| || ||||| ||||||||| |||| ||| |||||||||||||||| |||||||| |||||||||||||||||||| ||| |||| |
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| T |
13826756 |
gtcgcagaacaatgaccaatcgataaggatttatcctagatgatggaatagaaaccttcctggaaagaggctgccgagcttcatcattcctgcat-aaca |
13826854 |
T |
|
| Q |
383 |
aagaaagctga |
393 |
Q |
| |
|
|||||| |||| |
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|
| T |
13826855 |
aagaaaactga |
13826865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 487 - 820
Target Start/End: Original strand, 13827361 - 13827683
Alignment:
| Q |
487 |
atactaataacttgggagacaagaagtcatagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaat |
586 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||| |||| || |||||| | ||||||| ||||| ||| ||| ||| |
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|
| T |
13827361 |
atactaataacttgggagacaagaagttagagttgaacacatcatctgtatataa-----------atgagcctctatatatgaaatggacacattgaat |
13827449 |
T |
|
| Q |
587 |
acattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataaatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaac |
686 |
Q |
| |
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|||||||||| ||||||| |||| |||||||||| ||||||||| |||||||||| |||| || ||||||||||||| ||||||| ||||||||| | |
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| T |
13827450 |
acattatctacttttcttgatatatgtgaaaattggaaaaggggcatataataaataacagagatagtaaaggaaatactcacaacaatgaatcatcagc |
13827549 |
T |
|
| Q |
687 |
tggtacatcagatctggaatcaacatctccatcgcctctttcagaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccac |
786 |
Q |
| |
|
| |||||||||||| ||||| ||||||| | ||||||||||||| |||||||| || |||||| ||| ||||||||||||| |||||||||||| |
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|
| T |
13827550 |
aaggacatcagatctgccatcaatatctccagcccctctttcagaagcagcttggcctgtgctcatcggagcagcattcttttctggcttcatcttccag |
13827649 |
T |
|
| Q |
787 |
gcgtcaactctttctttccacgctatatttccca |
820 |
Q |
| |
|
|||||||||||||| |||| |||| ||| |||| |
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|
| T |
13827650 |
ccgtcaactctttctctccatgctacattgccca |
13827683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 269 - 376
Target Start/End: Complemental strand, 43947835 - 43947728
Alignment:
| Q |
269 |
gcaaaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatca |
368 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | |||||||||| ||||| |||||||| |||||||||||||||| || || |||||||||||| ||||| |
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|
| T |
43947835 |
gcaaaggataaccaattgcagaacaatgaccatgcgatatggaattatcctagaggatggaatagaaaccttcctggatagtggttgccgagctacatca |
43947736 |
T |
|
| Q |
369 |
ttcctaca |
376 |
Q |
| |
|
||| |||| |
|
|
| T |
43947735 |
ttcataca |
43947728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 117 - 374
Target Start/End: Complemental strand, 9477312 - 9477055
Alignment:
| Q |
117 |
ctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataactgatatcaacc |
216 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| || | |||||| |||| || || ||||||||||| |||| |
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|
| T |
9477312 |
ctgtccagatatgtttcacggttcacaggaagccacttggggaactgatccaagatccaagaaaaggcaaaccaaacttcacatataactgatattaacc |
9477213 |
T |
|
| Q |
217 |
ataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaaaggataaccagtcgcataacaatgacaaagcgatatggatttat |
316 |
Q |
| |
|
| || | ||| ||| || | || ||||| || ||||| || ||| | ||||||||| || |||| ||||||||| | |||||||||||||| |
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|
| T |
9477212 |
acaacgcataagcattgggtacgggatttgtaattcggtagtgcaagaaaatgacaaggataacaagccgcagaacaatgaccatacgatatggatttat |
9477113 |
T |
|
| Q |
317 |
cttagaggatcgaatagaaaccttcctagaaagaggttgccgagcttcatcattccta |
374 |
Q |
| |
|
| |||| ||| |||||||||||||||| ||||| ||||| |||||||||||||||||| |
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|
| T |
9477112 |
cctagaagatggaatagaaaccttcctcgaaagtggttgtcgagcttcatcattccta |
9477055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 640
Target Start/End: Original strand, 3865824 - 3865880
Alignment:
| Q |
584 |
aatacattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataa |
640 |
Q |
| |
|
|||||| || ||||| |||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
3865824 |
aatacactacctattcttcttaatatatgtgaaaattgcaaaagaggcttataataa |
3865880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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