View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_20 (Length: 350)
Name: NF20463_low_20
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 32176408 - 32176751
Alignment:
| Q |
8 |
acaacacctcaaatattgttgacattatttttccacttttgaattagcttctgaatggtaacctcacaatctccaccaacacttatagccttccttcctt |
107 |
Q |
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| T |
32176408 |
acaacacctcaaatattgttgacattatttttccacttttgaattagcttctgaatggtaacctcacaatctccaccaacacttatagccttccttcctt |
32176507 |
T |
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| Q |
108 |
cctctttaagctctattgctttaactttaaacaattcattcttcatcatctcttttatagcatctccaatttcttctcctttcacaacaagttcaccacc |
207 |
Q |
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| T |
32176508 |
cctctttaagctctattgctttaactttaaacaattcattcttcatcatctcttttatagcatctccaatttcaccccctttcacaacaagttcaccacc |
32176607 |
T |
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| Q |
208 |
ccaaccccaactcttgttcca-caccccccatccactaatctccaccaactttgcatttatcttctgatctccatgttgtggccaacccaaaattggtac |
306 |
Q |
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| T |
32176608 |
ccaaccccaactcttgttccaccaccccccatccactaatctccaccaactttgcatttatcttctgatctccatgttgtggccaacccaaaattggtac |
32176707 |
T |
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| Q |
307 |
accattcaaagctgcttctgtaattgagttccatccacaatgac |
350 |
Q |
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| T |
32176708 |
accattcaaagctgcttctgtaattgagttccatccacaatgac |
32176751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 32183590 - 32183918
Alignment:
| Q |
22 |
attgttgacattatttttccacttttgaattagcttctgaatggtaacctcacaatctccaccaacacttatagccttccttccttcctctttaagctct |
121 |
Q |
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|||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||| ||||||| || |||||| || ||| | |||||||||||| |
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| T |
32183590 |
attgttgacattgtttttccactttcgaataagcttctgaatagtaacctcacaatccccaccaatgctaatagccctcaatcccccatctttaagctct |
32183689 |
T |
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| Q |
122 |
attgctttaactttaaacaattcattcttcatcatctcttttatagcatctccaatttcttctcctttcacaacaagttcaccaccccaaccccaactct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
32183690 |
attgctttaactttaaacaattcattcttcatcatctcttttatagcatctccaatttcttctcctttcacaacacgttcaccaccccaaccccaattct |
32183789 |
T |
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| Q |
222 |
tgttccacaccccccatccactaatctccaccaactttgcatttatcttctgatctccatgttgtggccaacccaaaattggtacaccattcaaagctgc |
321 |
Q |
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||||||| | |||||||||||||||||| |||||| |||||||||| | ||||| ||||||||||||||| |||| ||||| ||||||||||||||||| |
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| T |
32183790 |
tgttccaaatcccccatccactaatctcaaccaaccctgcatttatcctttgatcaccatgttgtggccaagccaatattggcacaccattcaaagctgc |
32183889 |
T |
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| Q |
322 |
ttctgtaattgagttccatccacaatgac |
350 |
Q |
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| T |
32183890 |
ctccataattgagttccatccacaatgac |
32183918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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