View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_23 (Length: 313)
Name: NF20463_low_23
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 46009340 - 46009641
Alignment:
| Q |
1 |
ttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatacctgacttaaaagcaccaatgtttccactact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
46009340 |
ttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatatctgacttaaaagcaccaatgtttcaactact |
46009439 |
T |
|
| Q |
101 |
tgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009440 |
tgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacac |
46009539 |
T |
|
| Q |
201 |
tgtgagaatacactgcgtgaatggtttgatgagaaagagtactctattgatgaacttgtatatgatcatgtgcttggtcctgatcttgctttttctcctt |
300 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46009540 |
tgtgagaaaacactgcgtgaatggttggatgagaaagagtactctgttgatgaacttgtatatgatcatgtgcttggtcctgatcttgcattttctcctt |
46009639 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
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|| |
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| T |
46009640 |
tg |
46009641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 302
Target Start/End: Original strand, 15921977 - 15922276
Alignment:
| Q |
3 |
atgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatacctgacttaaaagcaccaatgtttccactacttg |
102 |
Q |
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||||| || |||||| |||| ||||| || || ||| ||||| |||| |||||| ||| ||||| | || |||||| |||| ||||||||||| || | |
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| T |
15921977 |
atgaagcttcactatgtccggtccatttatttcttcgattctgaagctgttcaaggccttacaatatccgatttaaaaacaccgatgtttccactgctgg |
15922076 |
T |
|
| Q |
103 |
attcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactg |
202 |
Q |
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| T |
15922077 |
atttgtactcgcatgttgccggtcgagttagaatagccaaatccggcagaccgtttatcaaatgcaatgatgccggtgtgcgaatcgcggagtcgcagtg |
15922176 |
T |
|
| Q |
203 |
tgagaatacactgcgtgaatggtttgatgagaaagagtactctattgatgaacttgtatatgatcatgtgcttggtcctgatcttgctttttctcctttg |
302 |
Q |
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||| || || ||| | |||||||| ||||| || ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15922177 |
tgataaaacgctgagggaatggttggatgaaaatgagtattcagttgatgaacttgttcatgatcatgtgcttggtcctgatcttgctttttctcctttg |
15922276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 13114275 - 13114570
Alignment:
| Q |
3 |
atgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatacctgacttaaaagcaccaatgtttccactacttg |
102 |
Q |
| |
|
||||||||||||||||||||||| || || | ||||| ||| ||| | |||||||||||| || | ||||||||| ||||||| | | ||||||| | |
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| T |
13114275 |
atgaaactccactatatccgatcaatttatgtattcaactctgaagtcatgcaaaacctctcattatccgacttaaaaacaccaatttatgcactactcg |
13114374 |
T |
|
| Q |
103 |
attcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactg |
202 |
Q |
| |
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| || | |||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| || || || || | || ||| ||| || |
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| T |
13114375 |
agtcttgctcacatgtttcaggtcggattagaatactcgaatctggaagaccgtttatcaagtgcaacgatgcaggagtacgcgtggctgagacacggtg |
13114474 |
T |
|
| Q |
203 |
tgagaatacactgcgtgaatggtttgatgagaaagagtactctattgatgaacttgtatatgatcatgtgcttggtcctgatcttgctttttctcc |
298 |
Q |
| |
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||| || || |||| ||||||||||||||| ||||| ||| | |||| | | |||| ||||||||||||||||||||||||||||||||||| |
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| T |
13114475 |
tgataaaacgctgcatgaatggtttgatgaaaaagaatacagtgttgaaggatttgtcccagatcatgtgcttggtcctgatcttgctttttctcc |
13114570 |
T |
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