View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20463_low_24 (Length: 310)
Name: NF20463_low_24
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 1699423 - 1699152
Alignment:
| Q |
16 |
atggttgtgtagatttgtcaggtcggcctacttaaataaatataaataatatgtttttaaacttttgtgcattatattcttgtaggtaagcaatggtatt |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1699423 |
atggtcgtgtagatttgtcaggtcggcctacttaaataaatataaataatatgtttttaaacttttgtgcattatattcttgtaggtaagcaatggtatt |
1699324 |
T |
|
| Q |
116 |
ggagtggtttctggaattgttcagctcatactatatgcttgctatttctctcgcaaaggtgaagaggatggtgatggtgatggtgattttgagttgaaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1699323 |
ggagtggtttctggaattgttcagctcatactatatgcttgctatttctctcgcaaaggtgaagaggatgatgatggtgatggtgattttgagttgaaac |
1699224 |
T |
|
| Q |
216 |
caactggagttcgtgagatctcttcaaatggaagagctacagcatgatgatgaattaccctataacatcata |
287 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1699223 |
caactggagttcgtgatatctcttcaaatggaagagctacagcatgatgatgaattaccctataacatcata |
1699152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 1684238 - 1684190
Alignment:
| Q |
104 |
agcaatggtattggagtggtttctggaattgttcagctcatactatatg |
152 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
1684238 |
agcaatggtattggagtaatctctggaactgttcagctcatactatatg |
1684190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 7383629 - 7383663
Alignment:
| Q |
33 |
tcaggtcggcctacttaaataaatataaataatat |
67 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
7383629 |
tcaggtcggcctacttaaataaatatgaataatat |
7383663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University