View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_27 (Length: 305)
Name: NF20463_low_27
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 34317955 - 34318240
Alignment:
| Q |
1 |
cacttgtacaattaaaggataatctcagccatttgccattaaatgttacacagcaacacttccaaaatgaccgatcactatcaattaattccaatccctc |
100 |
Q |
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| T |
34317955 |
cacttgtacaattaaaggataatctcagccatttgccattaaatgttacacagcaacacttccaaaatgaccgatcactatcaattaattccaatccctc |
34318054 |
T |
|
| Q |
101 |
cagttacaaaagtgattacattagacctgtgaattcaacggtgtcttcagttgatacctttcctagtcagtccaaaagcgatatcattttcacttcaaat |
200 |
Q |
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| T |
34318055 |
cggttacaaaagtgattacattagacctgtgaattcaacggtgtcttcagttgatacctttcctagtcagtccaaaagcgatatcattttcacttcaaat |
34318154 |
T |
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| Q |
201 |
ttgagtttaaaaacaccaaaatttaatcttggctgcgcttctgatatggaaatctaccaaagaaacttacttttgggtattgagtc |
286 |
Q |
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| T |
34318155 |
ttgagtttaaaaacaccaaaatttaatcttggctgcgcttctgatatggaaatctaccaaagaaacttacttttgggtattgagtc |
34318240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 26375981 - 26376159
Alignment:
| Q |
1 |
cacttgtacaattaaaggataatctcagccatttgccattaaatgttacacagcaacacttccaaaatgaccgatcactatcaattaattccaatccctc |
100 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| | ||| |||| | ||||||||||| |||||||| |
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| T |
26375981 |
cacttgtacaattaaaggacaatctcatccatttgccattaaatgttacacaacaacacttccaaatttaccaatcaatttcaattaattctaatccctc |
26376080 |
T |
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| Q |
101 |
cagttacaaaagtgattacattagacctgtgaattcaacggtgtcttcagttgatacctttcctagtcagtccaaaagc |
179 |
Q |
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| T |
26376081 |
tcattacaacagtgattacattagttctgtgaattcaatgatgtcttcagatgataccttttctagtccgtccaaaagc |
26376159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 35680681 - 35680779
Alignment:
| Q |
82 |
caattaattccaatccctccagttacaaaagtgattacattagacctgtgaattcaacggtgtcttcagttgatacctttcctagtcagtccaaaagcg |
180 |
Q |
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|||||||||||||||||||| |||||| |||||||| |||| | ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
35680681 |
caattaattccaatccctcccattacaacagtgattagattaatcttgtgaattcaatggtgtcatcagttgatacctttcctagtcagtccaaaagcg |
35680779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35680616 - 35680683
Alignment:
| Q |
1 |
cacttgtacaattaaaggataat---ctcagccatttgccattaaatgttacacagcaacacttccaa |
65 |
Q |
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||||||||||||||||||| || ||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
35680616 |
cacttgtacaattaaaggacaaattactccgccatttgccgttaaatgttacacaacaacacttccaa |
35680683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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