View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20463_low_28 (Length: 296)
Name: NF20463_low_28
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_28 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 30024758 - 30025040
Alignment:
| Q |
14 |
caaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024758 |
caaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaaca |
30024857 |
T |
|
| Q |
114 |
atacttaggtgagttaaaagcataacaagcactcttacaacccaccacttgattcatgtcacttgacctaacttgaaggctcatgggacacatgacgtta |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30024858 |
atactcaggtgagttaaaagcataacaagcactcttacagcccaccacttgattcatgtcacttgacctaacttgaaggctcatgggacacatgacgtta |
30024957 |
T |
|
| Q |
214 |
agatccctaacacaaccggcgaattcacattttccgttaccatttaatggcgttatggttaatggaagattgtaaccgtccac |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30024958 |
agatccctaacacaaccggcgaattcacattttccgttaccatttaatggcgttatggttaacggaagattgtaaccgtccac |
30025040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 45273198 - 45273361
Alignment:
| Q |
19 |
gcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaacaatact |
118 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||| |||||| ||||||||| || | ||||||| | ||| | |||| || || |||||| |
|
|
| T |
45273198 |
gcataagagtaagcctttgggcaagcagttttgaagattcttgaataagcagtgggcttgcaggtctgtggggtaccaaagttaccagtacagcaatacc |
45273297 |
T |
|
| Q |
119 |
taggtgagttaaaagcataacaagcactcttacaacccaccacttgattcatgtcacttgacct |
182 |
Q |
| |
|
|||| ||||| |||||| ||||||||| ||||||||||||| || ||| |||||| |||||| |
|
|
| T |
45273298 |
taggagagttgaaagcagcacaagcacttctacaacccaccacgtgcttcttgtcacgtgacct |
45273361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University