View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_30 (Length: 293)
Name: NF20463_low_30
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_30 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 36 - 293
Target Start/End: Complemental strand, 5768705 - 5768448
Alignment:
| Q |
36 |
tttgctctgcaccttactgtgcccagtgagataaaccaaggacatccactacactactcaagcatgcaacctaacttgtaatcctgaacatgaaataaga |
135 |
Q |
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| T |
5768705 |
tttgctctgcaccttactgtgcccagtgagataaaccaaggacatccactacactactcaagcatgcaacctaacttgtaatcctgaacatgaaataaga |
5768606 |
T |
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| Q |
136 |
tccaaatgctgattcacgttgtagaagaatacgaacaccaaaccataacttgcaagttgaatcaaaatagaaataactttgactgcaaaattgttatgtt |
235 |
Q |
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| T |
5768605 |
tccaaatgctaattcacgttgtagaagaatacgaacaccaaaccataacttgcaagttgaatcaaaatagaaataactttgactgcaaaattgttatgtt |
5768506 |
T |
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| Q |
236 |
ttcaattccaaccaatgaagcagaccatatccataaatatctacagaatatagtggtc |
293 |
Q |
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| T |
5768505 |
ttcaattccaaccaatgaagcagaccatatccataaatatctacagaatatagtggtc |
5768448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 18315844 - 18315764
Alignment:
| Q |
213 |
tttgactgcaaaattgttatgttttcaattccaaccaatgaagcagaccatatccataaatatctacagaatatagtggtc |
293 |
Q |
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| T |
18315844 |
tttgactgctaaattgttatctttccaattccaaccaacaaagaaaatcatatccataaatatctacataatccagtggtc |
18315764 |
T |
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