View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20463_low_35 (Length: 272)
Name: NF20463_low_35
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_35 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 30025322 - 30025068
Alignment:
| Q |
18 |
caaatctggcccgggctacagccaactgcaggaaagcctatcatagcccaaggaggtttcaaccttccatccaacaatgcctacacaatccaacttccac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
30025322 |
caaatctggcccgggctacagccaactgcaggaaagcctatcatagcccaaggaggtttcaaccttccatctaacaatgcctacacactccaacttccac |
30025223 |
T |
|
| Q |
118 |
cgctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025222 |
cgctttggtcaggtcgcatatgggcccgcgacaactgctccttcgacgctacaggccacggtcactgcaccactggagactgcggtggtatactctcatg |
30025123 |
T |
|
| Q |
218 |
taacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaac |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025122 |
taacggccttggtggcacgccaccggcaacactagccgaattcactctcggcaac |
30025068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University