View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_37 (Length: 264)
Name: NF20463_low_37
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 13112476 - 13112243
Alignment:
| Q |
19 |
gaaggtatggattcttcaattcaatcacactaaggccaggagacttttgtggagaagaattgttaacatgggcattattaccaaactcaactctcaattt |
118 |
Q |
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| T |
13112476 |
gaaggtatggattcttcaattcaatcacactaaggccaggagacttttgtggagaagaattgttaacatgggcattattaccaaactcaactctcaattt |
13112377 |
T |
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| Q |
119 |
accttcctctactcgtaccgtaaaagctcttactgaagtagaagcttttgcgctacaagcggaggatctaaaatttgtggcgagtcagttcaagcgtctt |
218 |
Q |
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| T |
13112376 |
accttcctctactcgtaccgtaaaagctcttactgaagtagaagcttttgcgctacaagcggaggatctaaaatttgtggcgagtcagttcaagcgtctt |
13112277 |
T |
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| Q |
219 |
cacagcaagaaacttcagcatgcttttagatatt |
252 |
Q |
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| T |
13112276 |
cacagcaagaaacttcagcatgcttttagatatt |
13112243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 40678283 - 40678347
Alignment:
| Q |
27 |
ggattcttcaattcaatcacactaaggccaggagacttttgtggagaagaattgttaacatgggc |
91 |
Q |
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| T |
40678283 |
ggattcttcaattcaatcacactaaaaccaggtgatttttgtggtgaagaattgctaacatgggc |
40678347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 40678408 - 40678506
Alignment:
| Q |
152 |
tgaagtagaagcttttgcgctacaagcggaggatctaaaatttgtggcgagtcagttcaagcgtcttcacagcaagaaacttcagcatgcttttagata |
250 |
Q |
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| T |
40678408 |
tgaagtagaagcatttgcacttagagcagaagatctcaaatttgtgtcaagccagtttaagcgtcttcatagcaagaaactgcaacatgctttcagata |
40678506 |
T |
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