View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_38 (Length: 259)
Name: NF20463_low_38
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 3531578 - 3531323
Alignment:
| Q |
13 |
attcttaattaatttaaacttggagaaaattgtgaattatttaaagaaatcatgagta--------------------ttttcctattaatgcattgata |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3531578 |
attcttaattaatttaaacttggagaaaattgtgaattatttaaagaaatcatgagtacttaagtgaatctatgtgtattttcctattaatgcattgata |
3531479 |
T |
|
| Q |
93 |
tcatgaaattttcagcgtcttctccaactcttccactgtcctcggggaaacccccagcaggtagaacctctcaatcctctcaatttcatatgcaccactt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531478 |
tcatgaaattttcagcgtcttctccaactcttccactgtcctcggggaaacccccagcaggtagaacctctcaatcctctcaatttcatatgcaccactt |
3531379 |
T |
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| Q |
193 |
aagtagcacacaatagtgccttagcagttagcaatcttcttcaattattttatttt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531378 |
aagtagcacacaatagtgccttagcagttagcaatcttcttcaattattttatttt |
3531323 |
T |
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