View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_43 (Length: 243)
Name: NF20463_low_43
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1936782 - 1936546
Alignment:
| Q |
1 |
gcatgtgctcgaaatgaaacaatgatgttcacataaacatgtgctcaaaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataa |
100 |
Q |
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| T |
1936782 |
gcatgtgctcgaaatgaaacaatgatgttcacataaacatgtgctcaaaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataa |
1936683 |
T |
|
| Q |
101 |
ggatgttcacgaatcaattctcta--nnnnnnnnnngctaaattctctcttttttgtgttaaactcgtg-nnnnnnnngtattaaatgtttaggacagga |
197 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| || |
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| T |
1936682 |
ggatgttcacgaatcaattctctattttttttttgtgctaaattctctcttttttgtgttaaactcgtgtttttttttgtgttaaatgtttaggacacga |
1936583 |
T |
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| Q |
198 |
gtctcaatacatcagttttatggatttaatgatgatg |
234 |
Q |
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| T |
1936582 |
gtctcaatacatcagttttatggatttaatgatgatg |
1936546 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 34819695 - 34819621
Alignment:
| Q |
48 |
aaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctc |
122 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| |
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| T |
34819695 |
aaattaataaaaaataccacatatgagtggtacaagagtggtttgccacataagcatgtttatgaatcaattctc |
34819621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 37864024 - 37863950
Alignment:
| Q |
48 |
aaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctc |
122 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| |
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| T |
37864024 |
aaattaataaaaaataccacatatgagtggtacaagagtggtttgccacataagtatgtttatgaatcaattctc |
37863950 |
T |
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