View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_45 (Length: 243)
Name: NF20463_low_45
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11392646 - 11392862
Alignment:
| Q |
1 |
aaagggagaacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttcaaaagaataatggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11392646 |
aaagggagaacacttgagagccaatttcctgaatagaatgcgtgatattttcaaaaatacatttgttgcgagagcagcaaatcttcaaaagaataatggg |
11392745 |
T |
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| Q |
101 |
accaatcaaacctaaattagtactgaagtatttcaacaaagtgcgtaagttatcattatcagagggacgatcgacaagtggaggcaaaaggatcacacac |
200 |
Q |
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| T |
11392746 |
accaatcaaacctaaattagtactgaagtatttcaacaaagtgcgtaagttatcattatcagagggacgatcgagaagtggaggcaaaaggatcacacac |
11392845 |
T |
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| Q |
201 |
cctttgatgagtagata |
217 |
Q |
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||||||||||||||||| |
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| T |
11392846 |
cctttgatgagtagata |
11392862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 43147954 - 43148073
Alignment:
| Q |
37 |
aatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttcaaaagaataatgggaccaatcaaacctaaattagtactgaagtatttcaa |
136 |
Q |
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| T |
43147954 |
aatgcctgatatttttaaaattatatatgttgcgagagcaccaaatcttccaaaaaataatgagattaatcaaacaaaaattataattgaagtctttcaa |
43148053 |
T |
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| Q |
137 |
caaagtgcgtaagttatcat |
156 |
Q |
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| | ||| ||||| |||||| |
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| T |
43148054 |
ccatgtgtgtaagctatcat |
43148073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 35562365 - 35562288
Alignment:
| Q |
9 |
aacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttc |
86 |
Q |
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| T |
35562365 |
aacactcgagtgccaatttcttgaacaaaatgtttgatatcctcaaagatacatttgttgcgagaacaccaaatcttc |
35562288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 5484349 - 5484446
Alignment:
| Q |
9 |
aacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttcaaaagaataatgggaccaat |
106 |
Q |
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| T |
5484349 |
aacacttgagcgccaatttcttggatagaatgtttgatatcctcaaagatacatttgttgcgagaacaccaaatcttccaaatgataatgggaccaat |
5484446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 28427603 - 28427506
Alignment:
| Q |
9 |
aacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttcaaaagaataatgggaccaat |
106 |
Q |
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| T |
28427603 |
aacacttgagtgctaatttcttggacagaatgcttgatatcctcaaagatacatttgttgcgagaacaccaaatcttccaaatgataatgggaccaat |
28427506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 42470393 - 42470296
Alignment:
| Q |
9 |
aacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttcaaaagaataatgggaccaat |
106 |
Q |
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|||||||||| ||||||||| || | | |||||||||||| ||||| ||||||||||||||| | | |||||||| ||| |||||||||||||| |
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| T |
42470393 |
aacacttgagcgccaatttcttggacaaaatgcttgatatcctcaaagatacatttgttgcgacaataccaaatctttcaaatgataatgggaccaat |
42470296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 6931282 - 6931379
Alignment:
| Q |
9 |
aacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttcaaaagaataatgggaccaat |
106 |
Q |
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| T |
6931282 |
aacacttgagcaccaatttcttggacagaatgcttgatatcctcaaagatacatttgttgcgagaacaccaaatcttccaaatgataatgggatcaat |
6931379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 8327015 - 8326938
Alignment:
| Q |
9 |
aacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaatacatttgttgcgagagcagcaaatcttc |
86 |
Q |
| |
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|||||||||| ||||||||| || | | ||||||||||||| ||||| |||||||||||| |||| || ||||||||| |
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| T |
8327015 |
aacacttgagtgccaatttcttggacaaaatgcttgatattctcaaagatacatttgttgtgagaacaccaaatcttc |
8326938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 6997815 - 6997761
Alignment:
| Q |
5 |
ggagaacacttgagagccaatttcctgaatagaatgcttgatattttcaaaaata |
59 |
Q |
| |
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||||||||||||| | |||||| |||||||||||||||||||||||||||||| |
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| T |
6997815 |
ggagaacacttgaccacaaatttcatgaatagaatgcttgatattttcaaaaata |
6997761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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