View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20463_low_7 (Length: 578)
Name: NF20463_low_7
Description: NF20463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20463_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 3 - 562
Target Start/End: Original strand, 10005010 - 10005569
Alignment:
| Q |
3 |
gatgtcgaagaatattcgagaagttatactagcttactgtataatatttgttgctacttgttagtgttgtgtgttaattccttaattttcattagaatag |
102 |
Q |
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| T |
10005010 |
gatgttgaagactattcgagaagttatactagcttactgtataatatttgttgctacttgttagtgttgtgtgttaattccttaattttcattagaatag |
10005109 |
T |
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| Q |
103 |
tccctcggatgcaatgactcgaatcttgagataaatcaaagaatctctggaaaataagtaaattataagaacataggtccactaatagtgtttcgcatac |
202 |
Q |
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| T |
10005110 |
tccctcggatgcaatgactcgaatcttgagataaatcaaagaatctctggaaaataagtaacttataagaacataggtccactaatagtgtttcgcatac |
10005209 |
T |
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| Q |
203 |
aaatgcagatcggactagatgctacaatgatccacaataaacctctaatgggtgagatgccccaaagatgggggaatcttacttttcttaaagtgcgaga |
302 |
Q |
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| T |
10005210 |
aaatgcagatcggactagatgctacaatgatccacaataaacctctaatgggtgagatgccccaaagatgggggaatcttacttttcttaaagtgcgaga |
10005309 |
T |
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| Q |
303 |
agcaggatattgttgctttatccattaggcaaactatcaagctaggaatcttgctacatgtgagcttatttggttgcagcaacttctatgcgagttaagg |
402 |
Q |
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| T |
10005310 |
agcaggatattattgctttatccattaggcaaactatcaagctaggaatcttgctacatgtgagcttatttggttgcagcaacttctatgcgagttaagg |
10005409 |
T |
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| Q |
403 |
aatggaaaattggagcccgtgagtatgaaatgtgataatcagacagccttacatattgccctcaatccggtcttcttttataaaactaaacacataaaag |
502 |
Q |
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| T |
10005410 |
aattgaaaattggagcccgtgagtatgaaatgtgataatcagacagccttacatattgccctcaatccggtcttcttttataaaactaaacacataaaag |
10005509 |
T |
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| Q |
503 |
attgcttgtcattttctctgcgagaagatctttttaggcgaggacgttacacctattttg |
562 |
Q |
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| T |
10005510 |
attgcttgtcattttctctgcgagaagatctttttaggcgaggacgttacacctattttg |
10005569 |
T |
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