View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20464_high_14 (Length: 414)

Name: NF20464_high_14
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20464_high_14
NF20464_high_14
[»] chr1 (3 HSPs)
chr1 (19-366)||(46748727-46749061)
chr1 (247-295)||(16925588-16925636)
chr1 (225-289)||(18946048-18946112)
[»] chr8 (4 HSPs)
chr8 (211-295)||(42874497-42874581)
chr8 (221-290)||(18170492-18170561)
chr8 (221-290)||(18634060-18634129)
chr8 (223-290)||(26915252-26915319)
[»] chr7 (2 HSPs)
chr7 (223-300)||(1885543-1885620)
chr7 (223-297)||(5937433-5937507)
[»] chr6 (1 HSPs)
chr6 (221-300)||(1334631-1334710)
[»] chr5 (3 HSPs)
chr5 (213-300)||(30080503-30080590)
chr5 (195-262)||(42192284-42192351)
chr5 (223-300)||(19167588-19167666)
[»] chr3 (2 HSPs)
chr3 (221-262)||(14338493-14338534)
chr3 (228-284)||(41319327-41319383)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 46748727 - 46749061
Alignment:
Q  19 aagttggagacaattttttataaagcctcataatatcagagtcatacatatcacaaaaatgtcacatgcactatcgcataaaagggtttgcacctgtcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46748727 aagttggagacaattttttataaagcctcataatatcagagtcatacatatcacaaaaatgtcacatgcactatcacataaaagggtttgcacctgtcta 46748826  T
Q  119 gtagcaagaaaaaccaaaagttaccatctcggttgcacggacacttttaattaaaggcgtatctggtgtcttatacgtgtctgataccgacgcaacactg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||           ||||||||||||||||||||||||    
T  46748827 gtagcaagaaaaaccaaaagttaccatctcggttgcacggacacttttaattaaaggtgtgtctg-----------gtgtctgataccgacgcaacactg 46748915  T
Q  219 atatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtggtccaatcagtannnnnn 318  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||          
T  46748916 acatttgtgattacattgaactatgtcgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtgtggtgatccaatcaata--tttt 46749013  T
Q  319 nnnaggtccagcactacagtccattcaataaagaaaggtgattctttc 366  Q
       ||||| |||||||||||||||||||||||||||||||||||||||    
T  46749014 tttaggtctagcactacagtccattcaataaagaaaggtgattctttc 46749061  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 16925636 - 16925588
Alignment:
Q  247 ttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtc 295  Q
    ||||||||||||||||  ||| ||| | |||||||||||||||||||||    
T  16925636 ttttttcaaaattttatcggtatcgacatgtccgtgtcagtgtcatgtc 16925588  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 18946048 - 18946112
Alignment:
Q  225 gtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgt 289  Q
    |||||||||||||| |||| | |||| ||||||||| | |||||||| || ||||||||| ||||    
T  18946048 gtgattacattgaattatgtcattttctcaaaatttgactggtgtcgacgggtccgtgtccgtgt 18946112  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 42874581 - 42874497
Alignment:
Q  211 caacactgatatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtc 295  Q
    ||||||||| | |||||||||||||||| |||| | |||| ||||||| |||| ||||||| ||||||||||| |||||| ||||    
T  42874581 caacactgacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgttagtgtcgtgtc 42874497  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 18170492 - 18170561
Alignment:
Q  221 atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtc 290  Q
    |||||| ||||||||||| ||||   |||||||||| ||||||| ||||||||||||| ||||| |||||    
T  18170492 atttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtc 18170561  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 18634060 - 18634129
Alignment:
Q  221 atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtc 290  Q
    |||||| ||||||||||| ||||   |||||||||| ||||||| ||||||||||||| ||||| |||||    
T  18634060 atttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtc 18634129  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 26915252 - 26915319
Alignment:
Q  223 ttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtc 290  Q
    ||||||||||||| || |||| | |||| |||||||||||   |||||| ||||||||||||||||||    
T  26915252 ttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtcagtgtc 26915319  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 1885620 - 1885543
Alignment:
Q  223 ttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 300  Q
    |||||||||||||||| |||| | ||||||||||||||||   ||||||  |||||||| |||||||| |||| ||||    
T  1885620 ttgtgattacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtg 1885543  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 5937433 - 5937507
Alignment:
Q  223 ttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctg 297  Q
    |||||||||||||||| |||| | |||| |||||||||||   |||| | |||||| |||||||||| |||||||    
T  5937433 ttgtgattacattgaattatgtcattttctcaaaattttatccgtgttgacgtgtctgtgtcagtgttatgtctg 5937507  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 1334710 - 1334631
Alignment:
Q  221 atttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 300  Q
    |||||||||||||||||| |||| | ||||||||||||||||   |||||   ||||| ||||||||||| |||| ||||    
T  1334710 atttgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgtctgtgtcagtgtcgtgtccggtg 1334631  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 30080503 - 30080590
Alignment:
Q  213 acactgatatttgtgattacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 300  Q
    |||| |||| |||||||||||||||| |||| | |||| |||||||||||   |||||| | | ||||||||| |||| |||||||||    
T  30080503 acaccgatacttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacatttccgtgtcattgtcgtgtctggtg 30080590  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 42192351 - 42192284
Alignment:
Q  195 gtgtctgataccgacgcaacactgatatttgtgattacattgaactatgccgttttttcaaaatttta 262  Q
    ||||||||| ||||||||||| ||| || ||||||||||||||| |||| | || | |||||||||||    
T  42192351 gtgtctgatgccgacgcaacattgacatgtgtgattacattgaattatgtcattgtctcaaaatttta 42192284  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 19167588 - 19167666
Alignment:
Q  223 ttgtgattacattgaactatgccgtttt-ttcaaaattttaatggtgtcggcgtgtccgtgtcagtgtcatgtctggtg 300  Q
    |||||||||||||||| | || | |||| ||||||||||||  ||||||  |||||| ||||||||||| |||||||||    
T  19167588 ttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtctggtg 19167666  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 14338493 - 14338534
Alignment:
Q  221 atttgtgattacattgaactatgccgttttttcaaaatttta 262  Q
    |||||||||||||||||| |||| | ||||||||||||||||    
T  14338493 atttgtgattacattgaattatgtcattttttcaaaatttta 14338534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 41319327 - 41319383
Alignment:
Q  228 attacattgaactatgccgttttttcaaaattttaatggtgtcggcgtgtccgtgtc 284  Q
    ||||||||||| |||| | |||||||||| | ||| |||||||| ||||||||||||    
T  41319327 attacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

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