View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_20 (Length: 385)
Name: NF20464_high_20
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 33432797 - 33432438
Alignment:
| Q |
19 |
gttgttcttgggacaatagaagcaaacatatgcatgtctttatctcgagggtcactatcccttagatgaacacactaggggtccaatattctcgtcgtat |
118 |
Q |
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| T |
33432797 |
gttgttcttgggacaatagaagcaaacatatgcatgtctttatctcgagggtcactatcccttagatgaacacactaggggtccaatattctcgtcgtat |
33432698 |
T |
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| Q |
119 |
ggactatggctccacacttcatatcctttcttcttaattgaattcaaccttactctcccactaaacacttttccttcccttaaattttataattaattgt |
218 |
Q |
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| T |
33432697 |
ggactatggttccacacttcatatcctttcttcttaattgaattcaaccttactctcccactaaacacttttccttcccttaaattttataattagttgt |
33432598 |
T |
|
| Q |
219 |
tatgtaccaacaatatattttttacacacaaaatgaaggtgttagggttcgaactccgatcataaggtctagcctaacaatttcga---tatttttgcca |
315 |
Q |
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| T |
33432597 |
tatgtaccaacaatatattttttacacacaaaatgaaggtgttagagttcgaactccggtcataaggtccagcctaacaatttcgacattttttttgcta |
33432498 |
T |
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| Q |
316 |
tagttgagttataaattatgggaaaatatttttcttatctttgttcattataaacctatg |
375 |
Q |
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| T |
33432497 |
tagttgagttataatttatgggacaagatttttcttatctttgttcattataaacctatg |
33432438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 13403475 - 13403528
Alignment:
| Q |
263 |
gggttcgaactccgatcataaggtctagcctaacaatttcgatatttttgccat |
316 |
Q |
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| T |
13403475 |
gggttcgaactccggttatgacgttcagcctaacaatttcgatatttttgccat |
13403528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 22332225 - 22332176
Alignment:
| Q |
266 |
ttcgaactccgatcataaggtctagcctaacaatttcgatatttttgcca |
315 |
Q |
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| T |
22332225 |
ttcgaactccgatcataacatctggcctaacaatttcgacatttttgcca |
22332176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 40610658 - 40610726
Alignment:
| Q |
242 |
acacacaaaatgaaggtgttagggttcgaactccgatcataaggtctagcctaacaatttcgatatttt |
310 |
Q |
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| T |
40610658 |
acacacaaaatgaaggtaccgaggttcgaactccgatcatgacgtccagcctaacaatttcgacatttt |
40610726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 38882789 - 38882741
Alignment:
| Q |
263 |
gggttcgaactccgatcataaggtctagcctaacaatttcgatattttt |
311 |
Q |
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| T |
38882789 |
gggttcgaactccggtcatgacgtccagcctaacaatttcgacattttt |
38882741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 46734173 - 46734225
Alignment:
| Q |
263 |
gggttcgaactccgatcataaggtctagcctaacaatttcgatatttttgcca |
315 |
Q |
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|||||||||| |||||||| | || |||||||||||||||| |||||||||| |
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| T |
46734173 |
gggttcgaaccccgatcatgacatccagcctaacaatttcgacatttttgcca |
46734225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 30703162 - 30703110
Alignment:
| Q |
263 |
gggttcgaactccgatcataaggtctagcctaacaatttcgatatttttgcca |
315 |
Q |
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|||||||||| ||| |||| | || ||||||||||||||||||||||||||| |
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| T |
30703162 |
gggttcgaaccccggtcatgacatccagcctaacaatttcgatatttttgcca |
30703110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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