View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_26 (Length: 350)
Name: NF20464_high_26
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 3674731 - 3675054
Alignment:
| Q |
18 |
tttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgattttcatccttgttgaccatggcatagtagcagagtatcctgtttgtatt |
117 |
Q |
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| T |
3674731 |
tttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgattttcatccttgttgaccatggcatagtagcagagtatcctgtttgtatt |
3674830 |
T |
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| Q |
118 |
atgttagaacatcaacctcggctcaaaagaaaa-acgcaaacaaataacacacgagatttgatcagtgagacgtctacggctaccattgccgagcggatg |
216 |
Q |
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| T |
3674831 |
atgttagaacatcaacctcggctcaaaagaaaaaacgcaaacaaataacacacgagatttgatcagtgagacgtctacggctaccattaccgagcggatg |
3674930 |
T |
|
| Q |
217 |
ctatacctttcaataattcaaccttaggatttatagtgtacaaattgtgtttacatactatggtccaatttacaagattccacttatcagtaaactatga |
316 |
Q |
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| T |
3674931 |
ctatacctttctataattcaaccttaggatttatagtgtacaaattgtgtttacatactatggtccaatttacaagattccacttattagtaaactatga |
3675030 |
T |
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| Q |
317 |
atcatacggaacatattagaataat |
341 |
Q |
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| T |
3675031 |
atcatac-aaacatattagaataat |
3675054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 48553643 - 48553545
Alignment:
| Q |
18 |
tttatctgcttcatgaagaaatgctaagcctttagcagctcccaatgcgattttcatccttgttgaccatggcatagtagcagagtatcctgtttgtat |
116 |
Q |
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| T |
48553643 |
tttatctgcttcatgaaggaaagctagtcccttagctgcacctaatgcaattttcattctggttgaccatggtaatgtagcagagtatcctgattgtat |
48553545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 18327543 - 18327607
Alignment:
| Q |
25 |
gcttcatgaagaaatgctaagcctttagcagctcccaatgcgattttcatccttgttgaccatgg |
89 |
Q |
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|||||||||||||| ||||| ||||| |||||||| | || |||||||| |||||||||||||| |
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| T |
18327543 |
gcttcatgaagaaaggctaaaccttttgcagctccaacagcaattttcattcttgttgaccatgg |
18327607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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