View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_29 (Length: 326)
Name: NF20464_high_29
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 131 - 319
Target Start/End: Complemental strand, 32943212 - 32943024
Alignment:
| Q |
131 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32943212 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc |
32943113 |
T |
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| Q |
231 |
acttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatct |
319 |
Q |
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| T |
32943112 |
acttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatct |
32943024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 131 - 319
Target Start/End: Complemental strand, 32950393 - 32950205
Alignment:
| Q |
131 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32950393 |
tcaaatgagtgaatgtcatgaaatccgacatgaaatcctcgatacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgccc |
32950294 |
T |
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| Q |
231 |
acttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatct |
319 |
Q |
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| T |
32950293 |
acttcctcctccaccgttccatatcccaccaaaactacattttccataaggacatggatcattcactttaagtgccttaagaattatct |
32950205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32943366 - 32943250
Alignment:
| Q |
1 |
agacttgctcagctccagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaacctacacgtgtagacataatattag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
32943366 |
agacttgctcagctccagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaacctacacgtgtacaaataatattag |
32943267 |
T |
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| Q |
101 |
tagaagttcgatcaaga |
117 |
Q |
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| T |
32943266 |
tcgaagttcgatcaaga |
32943250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32950547 - 32950431
Alignment:
| Q |
1 |
agacttgctcagctccagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaacctacacgtgtagacataatattag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
32950547 |
agacttgctcagctccagttttcagatcctcgatacgaattttggaattgggcttatttggatcagcaatattaacctacacgtgtacaaataatattag |
32950448 |
T |
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| Q |
101 |
tagaagttcgatcaaga |
117 |
Q |
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| T |
32950447 |
tcgaagttcgatcaaga |
32950431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 32927367 - 32927280
Alignment:
| Q |
232 |
cttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatct |
319 |
Q |
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|||||||||||||| |||||||||||||||||||| || ||| ||| ||||||||||||||||||||||| |||||||| |||||| |
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| T |
32927367 |
cttcctcctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatct |
32927280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 32935632 - 32935542
Alignment:
| Q |
229 |
ccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatct |
319 |
Q |
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||||| ||||||||||| |||||||| |||| ||||| || || ||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
32935632 |
ccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatct |
32935542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 32924633 - 32924550
Alignment:
| Q |
224 |
tctgcccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgcct |
307 |
Q |
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|||| ||||||||||||||||| |||| || ||||||||||| || ||| ||| |||||||||| ||||| |||||| |||| |
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| T |
32924633 |
tctgtccacttcctcctccaccactccaaattccaccaaaagtgcaattctgatagggacatggataattcaatttaagagcct |
32924550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 319
Target Start/End: Complemental strand, 32912662 - 32912565
Alignment:
| Q |
222 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgccttaagaattatct |
319 |
Q |
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|||||| ||| |||| ||||| || ||||| || ||||||||||| || || ||| |||||||||| |||| ||||||||||||| ||||||||| |
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| T |
32912662 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatct |
32912565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 11824974 - 11824891
Alignment:
| Q |
224 |
tctgcccacttcctcctccaccgttccatatcccaccaaaagtacatttcccataaggacatggatcattcactttaagtgcct |
307 |
Q |
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|||| ||||||||||||||||| ||||| || ||||||||||| || ||| |||||||||||||| ||||| |||||| |||| |
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| T |
11824974 |
tctgtccacttcctcctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcct |
11824891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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