View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20464_high_3 (Length: 619)
Name: NF20464_high_3
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 10 - 600
Target Start/End: Original strand, 43365300 - 43365890
Alignment:
| Q |
10 |
catcatcacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaattttattaataaaattgaggcacacaattttgatgaaagct |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365300 |
catcaacacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaattttattaataaaattgaggcacacaattttgatgaaagct |
43365399 |
T |
|
| Q |
110 |
tccaattagggacctttaatgaaacacttacacgtttcttgatcagcactggtaaaacacgaccctcgtagcatttgggggtgcatttccttggaacacg |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365400 |
tccaattagggacctttaattaaacacttacacgtttcttgatcagcactggtaaaacacgaccctcgtagcatttgggggtgcatttccttggaacacg |
43365499 |
T |
|
| Q |
210 |
cactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatgtcattccggagggatgttataaaccaatcggcatcaaat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365500 |
cactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatgtcattccggagggatgttataaaccaatcggcatcaaat |
43365599 |
T |
|
| Q |
310 |
aattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtgttctgctaccaaagaaaatattatatg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365600 |
aattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtgttctgctaccaaagaaaatattatatg |
43365699 |
T |
|
| Q |
410 |
tgatttaagagacattcttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaagatgtatgatccaatgctggaataacaag |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365700 |
tgatttaagagacattcttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaagatgtatgatccaatgctggaataacaag |
43365799 |
T |
|
| Q |
510 |
agtagcattcaaaagataggcagccacaacagcatcaattatctgcacccacaaacaatctgtattttttcaataccagaaatattgcatc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365800 |
agtagcattcaaaagataggcagccacaacagcatcaattatctgcacccacaaacaatctgtattttttcaataccagaaatattgcatc |
43365890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University