View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20464_high_31 (Length: 319)
Name: NF20464_high_31
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 76 - 304
Target Start/End: Original strand, 7689375 - 7689603
Alignment:
| Q |
76 |
gaaatatgtaaacattgcaataaactgaaagttcagacgagagaggaagacgactaggcatcaaactttacctacaaaaacagtataaacatatgacata |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7689375 |
gaaatatgtaaacattgcaataaactgaaagttcagacgagagaggaagacgactaggcatgaaactttacctacaaaaacagtataaacatatgacata |
7689474 |
T |
|
| Q |
176 |
ttggaaatgcttttactatgtttagcatcatatattgttaatataaaattccctggttcccaatttccaaaggaaaacaactgaattccagtatccactt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7689475 |
ttggaaatgcttttactatgtttagcatcatatattgttaatataaagttccctggttcccaatttccaaaggaaaacaactgaattccagtatccactt |
7689574 |
T |
|
| Q |
276 |
cctcaaaatgtagatcagctattggtatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7689575 |
cctcaaaatgtagatcagctattggtatt |
7689603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 13888493 - 13888658
Alignment:
| Q |
139 |
aactttacctacaaaaacagtataaacatatgacatattggaaatgcttttactatgtttagcatcatatattgttaatataaaattccctggttcccaa |
238 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
13888493 |
aactttacctataaaaacagtataaacatatggcatattggaaatgcttttattatgtttagcatcatatattgttaacataaagttccccggttcccaa |
13888592 |
T |
|
| Q |
239 |
tttccaaaggaaaacaactgaattccagtatccacttcctcaaaatgtagatcagctattggtatt |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
13888593 |
ttgccaaaggaaaacaactgaattccagcttccacttcttcaaaatgaagatctgctattggtatt |
13888658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 14028618 - 14028783
Alignment:
| Q |
139 |
aactttacctacaaaaacagtataaacatatgacatattggaaatgcttttactatgtttagcatcatatattgttaatataaaattccctggttcccaa |
238 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
14028618 |
aactttacctataaaaacagtataaacatatggcatattggaaatgcttttattatgtttagcatcatatattgttaacataaagttccccggttcccaa |
14028717 |
T |
|
| Q |
239 |
tttccaaaggaaaacaactgaattccagtatccacttcctcaaaatgtagatcagctattggtatt |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
14028718 |
ttgccaaaggaaaacaactgaattccagcttccacttcttcaaaatgaagatctgctattggtatt |
14028783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University