View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_36 (Length: 277)
Name: NF20464_high_36
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 10193644 - 10193387
Alignment:
| Q |
18 |
tttccaacatgttataatggaaatattcagttgtatatacaaattttttaagaaagtaataaattgttgatatattagaagcagcttattgttccatctg |
117 |
Q |
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| T |
10193644 |
tttccaacatgttataatggaaatattcagttgtatatacaaattttttaagaaagtaataaattgttgatat--tagaagcagcttattgttccatctg |
10193547 |
T |
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| Q |
118 |
aataaatacgtggctgtttgctagannnnnnnn-aatcctttttataaactctggaaaacatgatttctttttcacatagtggctatttgtatatcattt |
216 |
Q |
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| T |
10193546 |
aataaatatgtggctgtttgctagatttttttttaatcctttttataaactctggaaaacatgatttctttttcacatagtggctatttgtatatca-tt |
10193448 |
T |
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| Q |
217 |
tgcagcaacttgggaagaacaacttacaattctttcactgcgttaagaggagttttacatc |
277 |
Q |
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| T |
10193447 |
tgcagcaacttgggaagaacaacttgcaattctttcactgcgttaagaggagttttacatc |
10193387 |
T |
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