View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_40 (Length: 258)
Name: NF20464_high_40
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 32274519 - 32274750
Alignment:
| Q |
11 |
cagagatagagtaagaataaagtggaa-ttatgaaatgctaagatagaagggnnnnnnntatgttttattatcacagtgacaataagaaagtcacaaatt |
109 |
Q |
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| T |
32274519 |
cagaaatagagtaagaataaagtggaaattatgaaatgctaagatagaagggattaaaatctgttttattatcacagtgacaataagatagtcacaaatt |
32274618 |
T |
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| Q |
110 |
aaaggccctaagtaaaaatctgttctaaactggtggcactcaaccaaaattaagcaaccttttatgtagatgtatctaccagaaaagttttggataaaag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32274619 |
aaaggccctaagtaaaaatctgttctaaactggtggcagtcaaccaaaattaagcaaccttttatgtagatgtatctaccagaaaagttttggataaaag |
32274718 |
T |
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| Q |
210 |
atgtcagcaagcatttgtagatcccaattact |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
32274719 |
atgtcagcaagcatttgtagatcccaattact |
32274750 |
T |
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