View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_46 (Length: 240)
Name: NF20464_high_46
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 29461153 - 29460943
Alignment:
| Q |
8 |
gttcaaataacgacatatctcttaacattttccaaaaaacaacaattataaatagacactattagtatttatttatccttgcaggaaacgtacatgcata |
107 |
Q |
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| T |
29461153 |
gttcaaataacgacatatctcttaacattttccaaaaaacaacaattataaatagacac------tatttatttatccttgcaggaaacgcacatgcata |
29461060 |
T |
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| Q |
108 |
cgttttctgtatgttcaaaagctgcaagttgttgggagagaattagcattcataatactgtatgtgagtactccactcgaaacataactttactgtaatg |
207 |
Q |
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| T |
29461059 |
cgttttctgtatgttcaaaagctgcaagttgttgggagagaattagcattcataatactgtatgtgagtactccactcgaaacataactttactgtaatg |
29460960 |
T |
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| Q |
208 |
ttgtttgacttacttag |
224 |
Q |
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||||||||||||||||| |
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| T |
29460959 |
ttgtttgacttacttag |
29460943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 43969376 - 43969507
Alignment:
| Q |
92 |
gaaacgtacatgcatacgttttctgtatgttcaaaagctgcaagttgttgggagagaattagcattcataatactgtatgtgag-tactccactcgaaac |
190 |
Q |
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| T |
43969376 |
gaaacgcagatgcatacgttttttgtttgttcaaaagctgcaacttgttggaccataattggcattaataatattgtccgtgagctactccaagaggcta |
43969475 |
T |
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| Q |
191 |
ataactttactgtaatgttgtttgacttactt |
222 |
Q |
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| T |
43969476 |
atgactttactgtaatgttgtttgacttactt |
43969507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 13021672 - 13021541
Alignment:
| Q |
92 |
gaaacgtacatgcatacgttttctgtatgttcaaaagctgcaagttgttgggagagaattagcattcataatactgtatgtgag-tactccactcgaaac |
190 |
Q |
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| T |
13021672 |
gaaacgcagatgcatacattttttgtttgttcaaaagttgcagcttgttggagcataattggcattgataatattgtatatgagctactccacgaggcta |
13021573 |
T |
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| Q |
191 |
ataactttactgtaatgttgtttgacttactt |
222 |
Q |
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| T |
13021572 |
atgactttactgtaatgttgtttgacttactt |
13021541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 13093196 - 13093065
Alignment:
| Q |
92 |
gaaacgtacatgcatacgttttctgtatgttcaaaagctgcaagttgttgggagagaattagcattcataatactgtatgtgag-tactccactcgaaac |
190 |
Q |
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| T |
13093196 |
gaaacgcagatgcatacattttttgtttgttcaaaagttgcagcttgttggagcataattggcattgataatattgtatatgagctactccacgaggcta |
13093097 |
T |
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| Q |
191 |
ataactttactgtaatgttgtttgacttactt |
222 |
Q |
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| T |
13093096 |
atgactttactgtaatgttgtttgacttactt |
13093065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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