View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_49 (Length: 228)
Name: NF20464_high_49
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_49 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 29461373 - 29461161
Alignment:
| Q |
16 |
gtaggcacttcttgccaaataatgtaatctataaacattctttaacattgataaataatatttgtacaatcatttcattcacttagtgacaacttttatg |
115 |
Q |
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| T |
29461373 |
gtaggcactttttgccaaataatgtaatctataaacattctttaatattgataaataatatttgtacaattatttcattcacttagtgacaatttttatg |
29461274 |
T |
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| Q |
116 |
acatctctctcgtactcttaatgtatttttactatctctattttgttttgatttttgtgtcattacttacatttctatgtgtatctttgattgtcccata |
215 |
Q |
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| T |
29461273 |
acatctctctcatattcttattgtatttttactatctctattttgttttgatttttgtgtcaatacttacatttctatgtgtatctttgattgtcccata |
29461174 |
T |
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| Q |
216 |
aattatccgtttt |
228 |
Q |
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| T |
29461173 |
aattatccttttt |
29461161 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 10375744 - 10375808
Alignment:
| Q |
158 |
ttgttttgatttttgtgtcattacttacatttctatgtgtatctttgattgtcccataaattatc |
222 |
Q |
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| T |
10375744 |
ttgttttgatttttgtgtcaatacctatatttctttgtatatctttgattgtcttataaattatc |
10375808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 611627 - 611563
Alignment:
| Q |
148 |
tatctctattttgttttgatttttgtgtcattacttacatttctatgtgtatctttgattgtccca |
213 |
Q |
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| T |
611627 |
tatctctatattgttttggtttttgtgtcaatactcatatttctttgtatat-tttgattgtccca |
611563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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