View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_5 (Length: 583)
Name: NF20464_high_5
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 22362382 - 22361829
Alignment:
| Q |
18 |
cttatcaatatctatctattacaaatctataaatgtcgaagtgcacgccatacagctgccacatcagtttctatatttctatcacattgtta-aatttct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22362382 |
cttatcaatatctatctattacaaatctataaatgtcgaagtgcacgccatacagctgccacatcagtttctatatttctatcacattgttacaatttct |
22362283 |
T |
|
| Q |
117 |
aaatcttcggtctaagagagaaatccttctcggctatgttaggtatatatctggtatgtacatattttacaaacctgaagaatggagaaagccttctctg |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22362282 |
aaatctttggtctaagagagaaatccttctcggctatgttaggtatatatctggtatgtgcatattttacaaacctgaagaatggagaaagccttctctg |
22362183 |
T |
|
| Q |
217 |
ctatgtacttctgtaagagcgttgctcctctttgctgaagtttgtcagggtggagacataatcttgctttctgatacgctttcttcacttgcgaactttc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362182 |
ctatgtacttctgtaagagcgttgctcctctttgctgaagtttgtcagggtggaggcataatcttgctttctgatacgctttcttcacttgcgaactttc |
22362083 |
T |
|
| Q |
317 |
tattagactcatataaggaactgcagaccagccactctgagaccacagaatctgtcaaacgaaaacatacaaccttgtcaattctcctgttattaactgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362082 |
tattagactcatataaggaactgcagaccagccactctgagaccacagaatctgtcaaacgaaaacatacaaccttgtcaattctcctgttattaactgc |
22361983 |
T |
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| Q |
417 |
atacatcatcgaaatggtattgaataagttgtcaatgatgaaaggtcaacaaaaaagaaaacattgattacacgatgtagtgtcgaaagcagcatcctga |
516 |
Q |
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| T |
22361982 |
atacatcatcgaaatggtattgaataagttgtcaatgatgaaaggtcagcaaaaaagaaaacattgattacacgatgtagtgtcgaaagcagcatcctga |
22361883 |
T |
|
| Q |
517 |
tgtcggtttccttgccagatgaccacaatctaatatctgtgtccaacttctctg |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22361882 |
tgtcggtttccttgccagatgaccacaatctaatatctgtgtccaacttctctg |
22361829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 34032446 - 34032556
Alignment:
| Q |
182 |
tttacaaacctgaagaatggagaaagccttctctgctatgtacttctgtaagagcgttgctcctctttgctgaagtttgtcagggtggagacataatctt |
281 |
Q |
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|||||| |||||||||||||||||||||| |||||||| |||||| |||| ||| ||||||||| |||| || |||||||| || || || ||||| ||| |
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| T |
34032446 |
tttacatacctgaagaatggagaaagcctgctctgctacgtacttgtgtaggagtgttgctcctttttgttgcagtttgtctggatgtaggcataacctt |
34032545 |
T |
|
| Q |
282 |
gctttctgata |
292 |
Q |
| |
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||||||||||| |
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| T |
34032546 |
gctttctgata |
34032556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 543
Target Start/End: Original strand, 34032758 - 34032817
Alignment:
| Q |
484 |
ttacacgatgtagtgtcgaaagcagcatcctgatgtcggtttccttgccagatgaccaca |
543 |
Q |
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||||| |||||||||| |||||||| | || |||||||||||| |||||||||||||||| |
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| T |
34032758 |
ttacatgatgtagtgttgaaagcagtagccggatgtcggtttctttgccagatgaccaca |
34032817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 570
Target Start/End: Original strand, 54306317 - 54306391
Alignment:
| Q |
496 |
gtgtcgaaagcagcatcctgatgtcggtttccttgccagatgaccacaatctaatatctgtgtccaacttctctg |
570 |
Q |
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||||||||||||| | ||||||| || |||||||| |||||||||| | ||| |||||| ||||||||||||||| |
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| T |
54306317 |
gtgtcgaaagcaggagcctgatgccgatttccttgtcagatgaccaaattcttatatctctgtccaacttctctg |
54306391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 54306270 - 54306309
Alignment:
| Q |
328 |
tataaggaactgcagaccagccactctgagaccacagaat |
367 |
Q |
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||||||||||||||||||||||||||| |||| ||||||| |
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| T |
54306270 |
tataaggaactgcagaccagccactctcagacgacagaat |
54306309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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