View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_high_6 (Length: 573)
Name: NF20464_high_6
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 155 - 559
Target Start/End: Complemental strand, 29282721 - 29282319
Alignment:
| Q |
155 |
ggttcaggttctggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
254 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282721 |
ggttcaggttcgggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
29282622 |
T |
|
| Q |
255 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacattaatgaataatgtttttacattaattaatgcaaataaatatggcattgattgaat |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282621 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacattaatcaataatgtttttacattaattaatgcaaataaatatggcattgattgaat |
29282522 |
T |
|
| Q |
355 |
attagcacactattttgtccagagcatttgattcatggtcaaatggacatgaccatggttttaaactatggtccgaaatgcaatataaaggtgtctgtaa |
454 |
Q |
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| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282521 |
actag--tactattttgtcaagagcatttgattcatggtcaaatggacatgaccatggttttaaactatggtccgaaatgcaatataaaggtgtctgtaa |
29282424 |
T |
|
| Q |
455 |
taacatcgcaaccacaattctgaccataatggtcatattttctcataatataacggtttgtggcgtatccacaaccgcggccacagttcaaaacctttct |
554 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29282423 |
taacatcgcaaccacaattctgaccataatggtcatattttctcataatataacggtttgtggcgtatccacaactgcggccacagttcaaaacctttct |
29282324 |
T |
|
| Q |
555 |
atatt |
559 |
Q |
| |
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||||| |
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| T |
29282323 |
atatt |
29282319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 155 - 338
Target Start/End: Original strand, 6470271 - 6470455
Alignment:
| Q |
155 |
ggttcaggttctggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
254 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6470271 |
ggttcaggttctggtttaggaactatttttgcttgttttttggtttttttatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
6470370 |
T |
|
| Q |
255 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacattaatgaata-atgtttttacattaattaatgcaaataaat |
338 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
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| T |
6470371 |
ctttccttgtgctaaactctgccactgctgtttgaactcctacattaatcaatacaagtttttacattaattaatgcaaataaat |
6470455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 42524926 - 42525072
Alignment:
| Q |
155 |
ggttcaggttctggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
254 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||| |||| |||||| ||| ||||||||| |||||| | ||||| || || |||||| | | |
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| T |
42524926 |
ggttcaggttctggttgtggaactattttggcttgctttttagttcgtctataaacaaaatccactaacttgttgccgtccatggtccccgtcacaataa |
42525025 |
T |
|
| Q |
255 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacatta |
301 |
Q |
| |
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| || ||||||||| ||| ||| || ||||||| |||||||||||| |
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| T |
42525026 |
cctttcctgtgctatgctcagtctctactgtttgtactcctacatta |
42525072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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