View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20464_low_10 (Length: 531)
Name: NF20464_low_10
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 45284518 - 45285030
Alignment:
| Q |
1 |
gaatcaatgatgaaagagatggctgatcttagattagaaactgtaaaagttcgggaccaactttcacatgttttgagtgaattgaaggccacacaaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45284518 |
gaatcaatgatgaaagagatggctgatcttagattagaaactgtaaaagttcgggaccaactttcacatgttttgagtgaattgaagtccacacaaagag |
45284617 |
T |
|
| Q |
101 |
agcttctgaacaaagatactgatatttttgctgctagagattcagaattgaatgctgtcactaaggcggaacagttggaaaatgagttgaagatggaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45284618 |
agcttctgaacaaagatactgatatttttgctgctagagattcagaattgaatgctgtcactaaggcggaacagttggaaaatgagttgaagatggaaaa |
45284717 |
T |
|
| Q |
201 |
ggaacagaaagaagaacttctgcatcaagtaaatgagcttaatgaacgtgttcacaggtcaaaacttgctgctattaaagttgagaaacagaatattgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45284718 |
ggaacagaaagaagaacttctgcatcaagtaaatgagcttaatgaacgtgttcacaggtcaaaacttgctgctattaaagttgagaaacagaatattgga |
45284817 |
T |
|
| Q |
301 |
atgttgtatcagaaagacgaggaaattcaattagctacaaaagataatgatcaagcgcaacaagagatggtagatatgagaaagaatatagatatgctgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45284818 |
atgttgtatcagaaagacgaggaaattcaattagctacaaaagataatgatcaagcgcaacaagagatagtagatatgagaaagaatatagatatgctgc |
45284917 |
T |
|
| Q |
401 |
atggattgcaaaataaacaaatggttgatgaaacactcactttatctgaggattctccttctaatgccataaaggacttatacaatgacattgaacaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45284918 |
atggattgcaaaataaacaaatggttgatgaaacactcactttatccgaggattctccttctaatgccataaaggacttatacaatgacattgaacaaaa |
45285017 |
T |
|
| Q |
501 |
ggaaagatatatc |
513 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45285018 |
ggaaagatatatc |
45285030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University