View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_12 (Length: 485)
Name: NF20464_low_12
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 56 - 466
Target Start/End: Complemental strand, 27327566 - 27327156
Alignment:
| Q |
56 |
ttatttgttgcagatgtttttgtttgctttcaagatgaaaaatatattttcaagaaagatcggtttgttgatgttgagggaattttatcaatgtatgaag |
155 |
Q |
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| T |
27327566 |
ttattttttacagatgttattgtttgttttgaagatgaaatatgtaatttcaagaacggtcattttgttgatgttgagggaatgttatcattgtatgaag |
27327467 |
T |
|
| Q |
156 |
catcgtttcattcatttgaagatgaaactatattggatgaagcaagagaaatcacatccaagtttctcaaagaatttttggaccaaaatgaaaataagag |
255 |
Q |
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| T |
27327466 |
catcatttcatttgtttgaagatgaacctatattggatgaagcaagagatgtcacatccaagtttctcaaagaatttttggacaaaaatggagataagaa |
27327367 |
T |
|
| Q |
256 |
catatcacttcaaataagtcatgctttggagcatccactacattgggcagttcctcgatgggaggctcaatggttcattgatatatacgatagacaagaa |
355 |
Q |
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| T |
27327366 |
catatcacttcaaataagtcatgctttggagcttccactacattggggaattcctcgatgggaggctaggtggttcattgatatatacgaaagacaacaa |
27327267 |
T |
|
| Q |
356 |
aataagaattatgttttacttgaatttgctaaattggatttcaacattcttcaaagcttataccaagaagaccttaagtatacgtcaaggtgctaaccaa |
455 |
Q |
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| T |
27327266 |
aataaaaatcatgttttacttgaatttgctcaattggatttcaacattcttcaaagcttataccaagaagaccttaagtatacgtcaaggtgctaaccaa |
27327167 |
T |
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| Q |
456 |
cttcaagtatt |
466 |
Q |
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| T |
27327166 |
cttcaaatatt |
27327156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 446
Target Start/End: Complemental strand, 27445659 - 27445333
Alignment:
| Q |
123 |
ttgatgttgagggaattttatcaatgtatgaagcatcgtttcattcatttgaagatgaaactatattggatgaagcaagagaaatcacatccaagtttct |
222 |
Q |
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|||||||||| ||| | |||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| | || || || | ||| |
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| T |
27445659 |
ttgatgttgaaggagtgttatcactgtatgaatcatcttttcattcatttgaagatgaaactatattggacgaagcaagagattttacctcaaaatgtct |
27445560 |
T |
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| Q |
223 |
caaagaat---ttttggaccaaaatgaaaataagagcatatcacttcaaataagtcatgctttggagcatccactacattgggcagttcctcgatgggag |
319 |
Q |
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| T |
27445559 |
caaagagtataatatgaatcagaatagtggtacctacacatcacttctaatcaaccatgctttggagcttccactacattggagagttcctcgatgggag |
27445460 |
T |
|
| Q |
320 |
gctcaatggttcattgatatatacgatagacaagaaaataagaattatgttttacttgaatttgctaaattggatttcaacattcttcaaagcttatacc |
419 |
Q |
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| T |
27445459 |
gctcattggttcattaatgtatatgaaagaaagcaaaacatgagtccaattttacttgaatttgctaaaattgatttcaacattgttcaaagcaactttc |
27445360 |
T |
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| Q |
420 |
aagaagaccttaagtatacgtcaaggt |
446 |
Q |
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| T |
27445359 |
aagaagaacttaagtatgcgtcaaggt |
27445333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 41 - 408
Target Start/End: Original strand, 18840345 - 18840712
Alignment:
| Q |
41 |
atttatattatataattatttgttgcagatgtttttgtttgctttcaagatgaaaaatatattttcaagaaagatcggtttgttgatgttgagggaattt |
140 |
Q |
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||||||||||| | |||||| |||||||| |||||||||||||||| ||||| || || ||| ||||||| | |||||| |||||| | ||||| | |
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| T |
18840345 |
atttatattatttgtttattttttgcagattgttttgtttgctttcaaaatgaagtatgtaattttaagaaaggacagtttgtagatgttcatggaatgt |
18840444 |
T |
|
| Q |
141 |
tatcaatgtatgaagcatcgtttcattcatttgaagatgaaactatattggatgaagcaagagaaatcacatccaagtttctcaaagaatttttggacca |
240 |
Q |
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| T |
18840445 |
tgtcaatgtatgaagcttcttttcattcgtttgaagatgaaacaatattggatgaagcaagagatttcaccacaaattttctcaaaggatatttgaaaca |
18840544 |
T |
|
| Q |
241 |
aaatgaaaataagagcatatcacttcaaataagtcatgctttggagcatccactacattgggcagttcctcgatgggaggctcaatggttcattgatata |
340 |
Q |
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|||| | || ||||||||||| |||||||||||||||||||| ||||||| ||||| || | |||||| ||||||| |||||||||| ||||| |
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| T |
18840545 |
aaatagaggcaaccacatatcacttctaataagtcatgctttggagcttccactaaattggacaatgtctcgattcgaggctcgatggttcattaatata |
18840644 |
T |
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| Q |
341 |
tacgatagacaagaaaataagaattatgttttacttgaatttgctaaattggatttcaacattcttca |
408 |
Q |
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| T |
18840645 |
tacgaaaaacaagaaaataagagtcatgttttactgcaattcgctaaattggatttcaacatccttca |
18840712 |
T |
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