View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_13 (Length: 471)
Name: NF20464_low_13
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 100 - 421
Target Start/End: Complemental strand, 37129426 - 37129099
Alignment:
| Q |
100 |
tgaaataccttgtgcaaaattcctaatccaacgatttatcaagaatttttcacatcttgagagatatagatagagagattggattaggaatatggttttt |
199 |
Q |
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| T |
37129426 |
tgaaataccttgtgcaaaattcctaatccaacgatttatcaagaatttttcacatcttgagagatatagatagagagataggattaggaatatggttttt |
37129327 |
T |
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| Q |
200 |
gaaatataaatatgagatgacgtttttggca-------nnnnnnnnnaattagtgttgcagggtgtaaccagaaataaaggatgtaaatagcacaaatga |
292 |
Q |
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| T |
37129326 |
gaaatataaatatgatatgacgtttttggcatttttttttgtttttgaattagtgttggagggtgtaaccagaagtaaaggatgtaaatagcacaaatgg |
37129227 |
T |
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| Q |
293 |
gaatatattttgtgtttagacggtttcatgtatccttnnnnnnnnntgatgaaaattgctcttcttccttnnnnnnntgttcactttcacgtaaattgat |
392 |
Q |
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| T |
37129226 |
gaatatattttgtgttcagacggtttcatgaatccttaaaaaaaaatgatgaaaattactctttttcctt-aaaaaatgttcacttccacgtgaattaat |
37129128 |
T |
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| Q |
393 |
taaaatatatccatgtgagttaattcatg |
421 |
Q |
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| T |
37129127 |
taaaatatctccacgtgagttaattcatg |
37129099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 41 - 324
Target Start/End: Complemental strand, 37121363 - 37121080
Alignment:
| Q |
41 |
taaaacttaaacactaaaaatcagccaacgatttacatacctatggaatggaatgttaatgaaataccttgtgcaaaattcctaatccaacgatttatca |
140 |
Q |
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| T |
37121363 |
taaaacttaagcactaaaaatcagtcaaccattcacttacctatgaaatggaatgttaatgaaataccttatgcaaaatttctaattcaacgatttttca |
37121264 |
T |
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| Q |
141 |
agaatttttcacatcttgagagatatagatagagagattggattaggaatatggtttttgaaatataaatatgagatgacgtttttgg----cannnnnn |
236 |
Q |
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| T |
37121263 |
agaatttttcacaccttgag------aggtagagagattggattacaaaaatggtttttaaaaaataaatatgagatggcgtttttggtatttaaatttt |
37121170 |
T |
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| Q |
237 |
nnnaattagtgttgcagggtgtaaccagaaataaaggatgtaaatagcacaaatgaga--atatattttgtgtttagacggtttcatgta |
324 |
Q |
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| T |
37121169 |
tgtaattagtattgaagggtgtaaccagaaataaaggatataaatagcacaaatgagaatatatattttgtgttgagacggtttaatgta |
37121080 |
T |
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