View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_14 (Length: 456)
Name: NF20464_low_14
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_14 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 14180679 - 14180257
Alignment:
| Q |
19 |
aaatcatggtataatgtatgtgcatatacaaatccagattcaaattcaaaaggtggtaataacattagtaggagtaaatattcttacccagttggataaa |
118 |
Q |
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| T |
14180679 |
aaatcatggtataatgtatgtgcatatacaaatccagattcaaattcaaaaggtggtaataacattagtaggagtaaatattcttacccagttggataaa |
14180580 |
T |
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| Q |
119 |
ttcatgttttcatcttgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtctattaatgatcaatgatataggtgagtacctat |
218 |
Q |
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| T |
14180579 |
ttcatgttttcatcttgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtctattaatgatcaatgatataggtgagtacctat |
14180480 |
T |
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| Q |
219 |
atgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtattaaaaataatg |
318 |
Q |
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| T |
14180479 |
atgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtattgaaaataatg |
14180380 |
T |
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| Q |
319 |
tgtcaataatttgtgttgaatgataatcacgaaaattaaaagagataggagtaatattgattaaaattaacaagaagtactctgatctaattacatagaa |
418 |
Q |
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| T |
14180379 |
tgtcaataatttgtgttgaatgataatcacgaaaattaaaagagataggaataatattgattaaaattaacaagaagtactctgatctaattacatagaa |
14180280 |
T |
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| Q |
419 |
aattaatacacccaatccctatg |
441 |
Q |
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| T |
14180279 |
aattaatacacccaatccctatg |
14180257 |
T |
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Target: scaffold0009 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 111 - 354
Target Start/End: Original strand, 95345 - 95571
Alignment:
| Q |
111 |
tggataaattcatgttttcatcttgcaagattctttcctgaatcacaa---catatatacaattattaatgatgtgtctattaatgatcaatgatatagg |
207 |
Q |
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| T |
95345 |
tggataaattgatattttcatcttgcaagattctttcctgaatcacaataacatatatacaattatggatcatgtgtctattaatagtcaatgat----- |
95439 |
T |
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| Q |
208 |
tgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtat |
307 |
Q |
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||| |||||||| |||||||||||||||||||||||||||| | ||| || ||||| || ||||||||||||||||| || |
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| T |
95440 |
---------------taactaaagagagggttagtttaattatatatgtcaccttcctgatcatattatcaatttgctgctgcatgagctcattctgcat |
95524 |
T |
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| Q |
308 |
taaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaat |
354 |
Q |
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| T |
95525 |
taaaaataatgtgtcaataatttgtgttgaaggatagtcatgaaaat |
95571 |
T |
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