View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_15 (Length: 444)
Name: NF20464_low_15
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 20973612 - 20973192
Alignment:
| Q |
15 |
acttacatcatcatcaaagaatttgcatgtagcacaaaagtactttcccaagcatactccacagtttatgcagttttgttgaacctgcaacattgaaaaa |
114 |
Q |
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| T |
20973612 |
acttacatcatcatcaaagaatttgcatgtaccacaaaagtactttcccaagcatactccacagtttatgcagttttgttgaacctgcaacattgaaaaa |
20973513 |
T |
|
| Q |
115 |
taatcaacacattaacacctacattcaatacctatatacagaatatatacacattgattattaatggttcatattttaggaactcacatcttgttctgtg |
214 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20973512 |
taatcagcacattaacacctacattcaatacctaaatacgaaatatatacacattgattattaatggttcatattttaagaactcacatcttgttctgtg |
20973413 |
T |
|
| Q |
215 |
tcacataaggtgcaaataatctgaaaagttacaaatgaaataggattaagtaagacagtgaacaaacatggtctgaaattatgtcaagaatcataaaatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20973412 |
tcacataaggtgcaaataatctgaaaagttacaaatgaaataggattaagtaagacagtgaacaaacatggtctgaaattatgtcaagaatcataaaatt |
20973313 |
T |
|
| Q |
315 |
attaataatctatgtattcttctccctaatcaagaagtagaagacaactctaatcaaatgcgaacctttttaacttcatgacgcggaatatcatgacgac |
414 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20973312 |
attaataatctaagtattcttctccctaatcaaaaagtagaagacaactctaatcaaatgcgaacctttttaacttcatgacgcggaatatcatgacgac |
20973213 |
T |
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| Q |
415 |
aatctggcttaatctcatctg |
435 |
Q |
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| T |
20973212 |
aatctggcttaatctcatctg |
20973192 |
T |
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