View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_16 (Length: 418)
Name: NF20464_low_16
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 2115927 - 2116328
Alignment:
| Q |
1 |
cataggacaatatattatgtagtagtttaaagtggcacaaaatctcatattgtacgatgtctagattaggatattgaagtacagtatagttttggaatca |
100 |
Q |
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| T |
2115927 |
cataggacaatatattatgtagtagtttaaagtggcacaaaatctcatattgtacgatgtctagattaagatattgaagtacagtatagttttggaatca |
2116026 |
T |
|
| Q |
101 |
nnnnnnngcattgaacacggtcacgagaatgtagttacttaccttttgttttgaagttttcgaaacattagttaataatattattaactaaatctgtaaa |
200 |
Q |
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| T |
2116027 |
tttttttgcattgaacacggtcacgagaatgtagttacttaccttttgttttgaagttttcgaaacattagttaataatattattaactaaacctgtaaa |
2116126 |
T |
|
| Q |
201 |
atgttgtagtaaaatcaaactataatataaaagagtgtaagaaatgttttcttttggataattgagctgcattatattgcagtccacgcatgcattgtct |
300 |
Q |
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| T |
2116127 |
atgttgtagtaaaatcaaactataatataaaagagtgtaagaaatgttttcttttggataattgagctgcattatattgcagtccacgcatgcattgtct |
2116226 |
T |
|
| Q |
301 |
ccaatatgcaaagtacaaaagctacaaattaaagatgcacaaacagaatattgtaaaaaatttgtagtaatcaattaatagtttcatttgcccactatat |
400 |
Q |
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| T |
2116227 |
ccaatatgcaaagtacaaaagctacaaattaaagatgcacaaacagaatattgtaaaaaatttgtagtaatcaattaatagtttcatttgcccactatat |
2116326 |
T |
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| Q |
401 |
at |
402 |
Q |
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|| |
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| T |
2116327 |
at |
2116328 |
T |
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