View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_18 (Length: 391)
Name: NF20464_low_18
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 37 - 379
Target Start/End: Complemental strand, 24750277 - 24749934
Alignment:
| Q |
37 |
tagattaaaaaatttgtgcagggttgtaaagatgagattttgtacttcacatacaaggcaagatgagaaaatattctttgattcttagttgtctcatatt |
136 |
Q |
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|||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750277 |
tagattaaaatatttgtttagggttgtaaagatgagtttttgtacttcacatacaaggcaagatgagaaaatattctttgattcttagttgtctcatatt |
24750178 |
T |
|
| Q |
137 |
tgcaaggattgtttaactacaataccttctcaacatgcaaacttccaaaggagttttcagttgtttcttctccaagaaaagtgatattctt-accagttt |
235 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
24750177 |
tgcaaggattgtttaattacaataccttctcaacatgcaaacttccaaaggagttttcagttgtttcttctccaagaaaagtgatattcttaaccatttt |
24750078 |
T |
|
| Q |
236 |
agttcaaaatattctggcaccaatgccttttcagaaagcttacacagtttctattattttgaatcttcgatcaaacaattgataataaaagtcataattt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24750077 |
agttcaaaatattctggcaccaatgccttttcagaaagcttacacagtttctattattttgaatcttcgatcaaacaattgataataaaagtcataattt |
24749978 |
T |
|
| Q |
336 |
gatgtataagcttatactaaaatttagaattttggcatccccta |
379 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24749977 |
gatgtataagcttatactcaaatttagaattttggcatccccta |
24749934 |
T |
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