View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20464_low_19 (Length: 390)
Name: NF20464_low_19
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 9072403 - 9072765
Alignment:
| Q |
14 |
cacagatgaggcaccaagccatgctcacacttttaagcataaatccacactccttttgtgacattcatgtggaaaaacgaatccaata-cttttcttctt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
9072403 |
cacacatgaggcaccaagccatgctcacacttttaagcataaatccacactccttttgtgacattcatgtggaaaaacgaatccaacaacttttcttctt |
9072502 |
T |
|
| Q |
113 |
gttatataaacaccattaattggtctctaaacctaactcaaactcacacaactaacttagcatctcctagataattccattatcnnnnnnncaacgtcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
9072503 |
gttatataaacaccattaattggtctctaaacctaactcaaactcacacaactaacttagcatctcctagctaattccattatctttttttcaacgtcat |
9072602 |
T |
|
| Q |
213 |
atttcaagacactaacttttcttcattctcaaccaaaatggcatccatttccattgccattgccacaaagagcattaagaatgtatatgatggaggtgaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9072603 |
atttcaagacactaacttttcttcattctcaaccaaaatggcatccatttccattgccattgccacaaagagcattaagaatgtatatgatggaggtgaa |
9072702 |
T |
|
| Q |
313 |
tggtttggttatgcatctgtagcttgcattgaagattatcacattggagatgtggattcatac |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9072703 |
tggtttggttatgcatctgtagcttgcattgaagattatcacattggagatgtggattcatac |
9072765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 9063325 - 9063694
Alignment:
| Q |
14 |
cacagatgaggcaccaagccatgctcacacttttaagcataaatccacactccttttgtgacattcatgtggaaaaacgaatccaatacttttcttcttg |
113 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| | || | | || | ||| ||||| |
|
|
| T |
9063325 |
cacacatgaggcaccaagcaatgctcacacttttaagcataaaaccacactccttttgtgtcattcatgtgccataatcactttaacaatttc--tcttg |
9063422 |
T |
|
| Q |
114 |
ttatataaacaccattaattggtctctaa--acc-taactcaaac---------tcacacaactaacttagcatctcctagataattccattatcnnnnn |
201 |
Q |
| |
|
|||||||||||||| | |||||||||| ||| || ||||||| ||||||||||| ||||||||||| ||| ||| ||||||||| |
|
|
| T |
9063423 |
ttatataaacacca---actggtctctaacaaccatagctcaaacccaacaaattcacacaactaccttagcatctcatagctaagtccattatcttctt |
9063519 |
T |
|
| Q |
202 |
nncaacgtcatatttcaagacactaacttttcttcattctcaaccaaaatggcatccatttccattgccattgccacaaagagcattaagaatgtatatg |
301 |
Q |
| |
|
||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
9063520 |
taaaacctcatatttcaaggcactaactttccttcaatctcaaccaaaatggcatccatttccattgccattgccacaaggagcattaagcatgtatatg |
9063619 |
T |
|
| Q |
302 |
atggaggtgaatggtttggtta---tgcatctgtagcttgcattgaagattatcacattggagatgtggattcat |
373 |
Q |
| |
|
||| || ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||| |
|
|
| T |
9063620 |
atgaagatgaatggtttggttatgctgcatctgtagcttgcattgaagattatcacactgaagatgtagattcat |
9063694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 9077027 - 9077391
Alignment:
| Q |
14 |
cacagatgaggcaccaagccatgctcacacttttaagcataaatccacactccttttgtgacattcatgtggaaaaacgaatccaatact-tttcttctt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||| | | | ||||||| |
|
|
| T |
9077027 |
cacacatgaggcaccaagccatgctcacacttttaagcataaatccacactccttttgtgacattcatgtgccataatcactccaacaatctctcttctt |
9077126 |
T |
|
| Q |
113 |
gttatataaacaccattaattggtctct---aaacctaactcaaactcacacaacta----acttagcatctcctagataattccattatcnnnnnnnca |
205 |
Q |
| |
|
||||||||||||||| | |||||||| || ||||||||||| ||||||||| | |||||||||||||| |||||| | ||| || |
|
|
| T |
9077127 |
gttatataaacacca--acatggtctctaacaaccctaactcaaa---acacaactaccttagttagcatctcctagctaattctgtaatcttcttgtca |
9077221 |
T |
|
| Q |
206 |
acgtcatatttcaagacactaac---ttttcttcattctcaaccaaaatggcatccatttccattgccattgccacaaagagcattaagaatgtatatga |
302 |
Q |
| |
|
|| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||| || || |
|
|
| T |
9077222 |
acctcacatttcaagacactaactttttttcttcattctcaaccaaaatggcctccattt------ccattcccacaaggagcattaagaatgcatgtgg |
9077315 |
T |
|
| Q |
303 |
tggaggtgaatggtttggttatgcatctgtagcttgca---ttgaagattatcacattggagatgtggattcatac |
375 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| |||||| ||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
9077316 |
tgaaggtgaatggtttggttttgcatctgtatcttgcaatgatgaagattaccacactggagatgtagattcatac |
9077391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 9060046 - 9060403
Alignment:
| Q |
14 |
cacagatgaggcaccaagccatgctcacacttttaagcataaatccacactccttttgtgacattcatgtggaaaaacgaatccaatacttt-tcttctt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||| | | | ||||||| |
|
|
| T |
9060046 |
cacacatgaggcaccaagccatgctcacacttttaagcataaatccacactccttttgtgacattcatgtgccataatcactccaacaatctctcttctt |
9060145 |
T |
|
| Q |
113 |
gttatataaacaccattaattggtctctaaa---cctaactcaaactca---------cacaactaacttagcatctcctagataattccattatcnnnn |
200 |
Q |
| |
|
||||||||||||||| | |||| ||||| |||||||||||| || |||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
9060146 |
gttatataaacaccaaca--tggtgtctaacaaccctaactcaaacacaacaaacttacacaactaccttagcatctcctagctaattccattatc---- |
9060239 |
T |
|
| Q |
201 |
nnncaacgtcatatttcaagacactaacttttcttcattctcaaccaaaatggcatccatttccattgccattgccacaaagagcattaagaatgtatat |
300 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||| ||||||| |||||| || |||||||||||| |||| || |||||| || | |
|
|
| T |
9060240 |
--------------ttcaagacactatcttttcttctttctcaagcaagatggcattcatttcaatctccattgccacaaggagctttcagaatgcatgt |
9060325 |
T |
|
| Q |
301 |
gatggaggtgaatggtttggttatgcatctgtagcttgcattg---aagattatcacattggagatgtggattcatac |
375 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||| | ||||||||| |
|
|
| T |
9060326 |
gatgaaggtgaatggttttgttatgcatctgtaggttgcattgaacaagataatcacattggagaagaagattcatac |
9060403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University