View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_2 (Length: 762)
Name: NF20464_low_2
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 654 - 745
Target Start/End: Original strand, 3077829 - 3077923
Alignment:
| Q |
654 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac---cttctcctccacactccaattgttctct |
745 |
Q |
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| T |
3077829 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacaccctcttctcctctacactccaattgttctct |
3077923 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 648 - 708
Target Start/End: Complemental strand, 44692782 - 44692722
Alignment:
| Q |
648 |
caagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttg |
708 |
Q |
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| T |
44692782 |
caagcaaaactttccaagaaagggccaccacttttgacggagccgggcttttccaaagttg |
44692722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 671 - 705
Target Start/End: Complemental strand, 15316260 - 15316226
Alignment:
| Q |
671 |
gccaccaccttagacggagccggacttttccaaag |
705 |
Q |
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| T |
15316260 |
gccacaaccttagacggagccggacttttccaaag |
15316226 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 709
Target Start/End: Original strand, 14248764 - 14248813
Alignment:
| Q |
660 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgg |
709 |
Q |
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| T |
14248764 |
tccaagaaagagccaccgccttagacggagccggactcttccaaatttgg |
14248813 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 744
Target Start/End: Original strand, 34866422 - 34866509
Alignment:
| Q |
660 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac---cttctcctccacactccaattgttctc |
744 |
Q |
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| T |
34866422 |
tccaagaaagggccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctc |
34866509 |
T |
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