View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20464_low_20 (Length: 389)

Name: NF20464_low_20
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20464_low_20
NF20464_low_20
[»] chr8 (1 HSPs)
chr8 (76-372)||(8785784-8786075)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 76 - 372
Target Start/End: Complemental strand, 8786075 - 8785784
Alignment:
Q  76 catgtctaatgtttagatcatttagtgagccaaaattaagtttaaacaaaaagagaagggcaccacacttgccaaggccttatttgattcccttaatata 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       
T  8786075 catgtctaatgtttagatcatttagtgagccaaaattaagtttaaacaaaa-gagaagggcaccacacttgccaaggccttatttgattcccttaat--- 8785980  T
Q  176 tttttccctctgtttctaactctacaacttgagtatgacaatgttaatctttttgcttttcatgaatttatggtgattgaagccactgcccaaccaataa 275  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8785979 -ttttccctctgtttctaactctacaacttgagtatgacaatgttaatctttttgcttttcatgaatttatggtgattgaagccactgcccaaccaataa 8785881  T
Q  276 aaatatgcacatatagatcacattggaccacatgttatatacctttcacaaatatggccatcaatttcgatagagctagctagcagcaatttcaatt 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8785880 aaatatgcacatatagatcacattggaccacatgttatatacctttcacaaatatggccatcaatttcgatagagctagctcgcagcaatttcaatt 8785784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University