View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_21 (Length: 387)
Name: NF20464_low_21
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 225 - 387
Target Start/End: Complemental strand, 22544044 - 22543882
Alignment:
| Q |
225 |
acagaactaagagtttgtgtcctattttcaaaaatttgcatgtgaaatagctatgtagtactgatactagattgaagttgtgtccaacttccgacgtgtg |
324 |
Q |
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| T |
22544044 |
acagaactaacagtttgtgtcctattttcaaaaatttgcatgtgaaatagctatgtagtactgatactagattgaagttgtgtccaacttccgacgtgtg |
22543945 |
T |
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| Q |
325 |
tcggtgtttgacagtaatacgacattgatgcatgtgattgcattcaaccactttcaactttac |
387 |
Q |
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| T |
22543944 |
tcggtgttcgacagtaatacgacattgatgcatgtgattgcattcaaccactttcaactttac |
22543882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 22544246 - 22544081
Alignment:
| Q |
23 |
cagagaggttcaatgtaagttggaagtcaaaacccatactgaagccctatcaacaagttaaacaaggaatgtatttgtaacccatcttcaccaagtactt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22544246 |
cagagaggttcaatgtaagttggaagtcaaaacccatactgaagccctatcaacaagttaaacaaggaatgtatttgtaacccatcttcaccaagtactt |
22544147 |
T |
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| Q |
123 |
gaaatcccagtgacaagagaaaataatcgaaaataacttagtagggccggtttggtttgaaaaaac |
188 |
Q |
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| T |
22544146 |
gaaatcccagtgacatgagaaaataatcgaaaataacttagtaggcccggtttggtttaaaaaaac |
22544081 |
T |
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