View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20464_low_22 (Length: 385)

Name: NF20464_low_22
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20464_low_22
NF20464_low_22
[»] chr7 (8 HSPs)
chr7 (18-215)||(33416252-33416449)
chr7 (18-215)||(33410403-33410600)
chr7 (18-215)||(33424305-33424502)
chr7 (242-369)||(33416476-33416603)
chr7 (18-215)||(33428087-33428284)
chr7 (18-184)||(33436457-33436623)
chr7 (262-369)||(33424566-33424674)
chr7 (262-317)||(33410664-33410719)
[»] scaffold0262 (1 HSPs)
scaffold0262 (18-158)||(5180-5320)
[»] chr1 (2 HSPs)
chr1 (69-197)||(24985049-24985177)
chr1 (69-197)||(24990879-24991007)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 33416252 - 33416449
Alignment:
Q  18 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416252 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcct 33416351  T
Q  118 ttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416352 ttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 33416449  T

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Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 33410403 - 33410600
Alignment:
Q  18 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33410403 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcct 33410502  T
Q  118 ttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 215  Q
    |||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||  || |||||||||    
T  33410503 ttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttg 33410600  T

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Target: chr7; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 33424305 - 33424502
Alignment:
Q  18 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33424305 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcct 33424404  T
Q  118 ttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 215  Q
    |||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||  || |||||||||    
T  33424405 ttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttg 33424502  T

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Target: chr7; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 33416476 - 33416603
Alignment:
Q  242 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416476 ttagatcatgtttgataaatacaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatgg 33416575  T
Q  342 acatttattttttccttttacataccta 369  Q
    ||||||||||||||||||||||||||||    
T  33416576 acatttattttttccttttacataccta 33416603  T

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Target: chr7; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 33428284 - 33428087
Alignment:
Q  18 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcct 117  Q
    |||||||||||||  |||||||| |||||||| ||||||| |||||||| ||||||||||||||||||| || ||||||| |||||  |||| |||||||    
T  33428284 agaacagtgatgatgaacttcatgtgacgagcagaacagttatcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcct 33428185  T
Q  118 ttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttg 215  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| |||| |||||| |||||||| ||||||||||| ||||||||||||||||||    
T  33428184 ttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagttg 33428087  T

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Target: chr7; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 33436457 - 33436623
Alignment:
Q  18 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcct 117  Q
    |||||||||||||| || ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33436457 agaacagtgatgacaaatttcatttgatgagcagaacaatgatcagctacgccacaaacataccactttcttccttctgtttttagttgaatgatatcct 33436556  T
Q  118 ttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaagagtgtgccattcacttt 184  Q
    |||| ||||| |||||||| |||||||||||||||||||||  ||  || ||||| |||||||||||    
T  33436557 ttcccgtagagagtgcttcattttttggtggaaaagtgcagtccttaaaaagtgtaccattcacttt 33436623  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 369
Target Start/End: Original strand, 33424566 - 33424674
Alignment:
Q  262 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaactaaataaacttgaaaccaaatggacatttatttttt-cctttt 360  Q
    |||||||||||||||||  || | || |||||| |||||| ||| |||| ||| ||||||||||||||||||||||||| | |||| |||||| ||||||    
T  33424566 acaaaagttaattataatcataatatgcactaactagttatgcagttgattataaactaaataaacttgaaaccaaatgaaaatttgttttttccctttt 33424665  T
Q  361 acataccta 369  Q
    |||||||||    
T  33424666 acataccta 33424674  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 33410664 - 33410719
Alignment:
Q  262 acaaaagttaattataactatgagatacactaattagttaagcaattgactatgaa 317  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  33410664 acaaaagttaattataattatgagatacactaattagttaaacaattgaatatgaa 33410719  T

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Target: scaffold0262 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 5320 - 5180
Alignment:
Q  18 agaacagtgatgaccaacttcatttgacgagccgaacagtgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcct 117  Q
    |||||||||||||| ||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5320 agaacagtgatgacaaactttatttgatgagcagaacaatgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcct 5221  T
Q  118 ttccggtagaaagtgcttcgttttttggtggaaaagtgcag 158  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  5220 ttcctgtagaaagtgcttcattttttggtggaaaagtgcag 5180  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 24985177 - 24985049
Alignment:
Q  69 ccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaaga 168  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||||||||| |||| || ||||||||||||||| || ||||    
T  24985177 ccacatacataccactttcttccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga 24985078  T
Q  169 gtgtgccattcactttaaaaacattgtgc 197  Q
    || | |||| |||||| || |||||||||    
T  24985077 gtttaccatccactttgaagacattgtgc 24985049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 24991007 - 24990879
Alignment:
Q  69 ccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctggaaga 168  Q
    ||||| |||||||||||||||||||| ||||| |||||||| |  ||||||||||| ||||||||||| |||| || ||||||||||||||| || ||||    
T  24991007 ccacatacataccactttcttccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga 24990908  T
Q  169 gtgtgccattcactttaaaaacattgtgc 197  Q
    || | |||| |||||| || |||||||||    
T  24990907 gtttaccatccactttgaagacattgtgc 24990879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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