View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_24 (Length: 378)
Name: NF20464_low_24
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 43061444 - 43061762
Alignment:
| Q |
1 |
tggagacgacaatgaaagttgtaacaatgagtacatatgattatatgaatatagtagtggttaagataaatatgttgatttactgcttttcttcacacta |
100 |
Q |
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| T |
43061444 |
tggagacgacaatgaaagttgtaacaatgagtacatatgattatatgaatatagtagtggttaagataaatatgttgatttactgcttttcttcacacta |
43061543 |
T |
|
| Q |
101 |
gagcaaattttgttgaaacctttcttgcaaactagaattttttcattctgagcagtaaaattttgttgaaaccttactatatgtaacctaggcaacgccg |
200 |
Q |
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| T |
43061544 |
gagcaaattttgttgaaacctttcttgcaaactagaattttttcattctgagcagtaaaattttgttgaaaccttactatatgtaacctgggcaacgccg |
43061643 |
T |
|
| Q |
201 |
ggtaaatacgctagttatatgaatttttcataagttaatgtttcccgttaagagctaaattagaaaattaatcgcgagcaaaagaaaaccaagaagcatc |
300 |
Q |
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| T |
43061644 |
ggtaaatacgctagttatatgaatttttcataagttaatgtttcccattaagagctaaattagaaaattaatcgcaagcaaaagaaatccaagaagcatc |
43061743 |
T |
|
| Q |
301 |
aatgatgagttcaaattcaaat |
322 |
Q |
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| T |
43061744 |
a---atgagttcaaattcaaat |
43061762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 11874047 - 11874008
Alignment:
| Q |
178 |
tatatgtaacctaggcaacgccgggtaaatacgctagtta |
217 |
Q |
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| T |
11874047 |
tatatgtaacccaggcaacgtcgggtaaatacgctagtta |
11874008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 9855626 - 9855586
Alignment:
| Q |
178 |
tatatgtaacctaggcaacgccgggtaaatacgctagttat |
218 |
Q |
| |
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||||||||| || ||||||||||| |||||||||||||||| |
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| T |
9855626 |
tatatgtaatctgggcaacgccggataaatacgctagttat |
9855586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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